PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G20600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | RAV | ||||||||
Protein Properties | Length: 387aa MW: 41216.4 Da PI: 10.2997 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.3 | 7.7e-13 | 71 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g LPERR05G20600.1 71 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 119 78****9888.8*********......44**********99*************98 PP | |||||||
2 | B3 | 92 | 4.2e-29 | 203 | 305 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+ tpsdv+k++rlv+pk++ae+h gg + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL + LPERR05G20600.1 203 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqispatiagvsggggGGGECKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHA 296 89***************************9999999999999886666799******************************************* PP T-EEEEEE- CS B3 77 gDfvvFkld 85 gD v F+++ LPERR05G20600.1 297 GDAVGFYRS 305 ******954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.74E-12 | 71 | 127 | No hit | No description |
Pfam | PF00847 | 1.6E-8 | 71 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-16 | 71 | 127 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-19 | 72 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-25 | 72 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.744 | 72 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-38 | 197 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.00E-27 | 201 | 305 | No hit | No description |
SuperFamily | SSF101936 | 2.09E-27 | 201 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-19 | 203 | 313 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.956 | 203 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-26 | 203 | 305 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDSTSCLLDD ASSGASTAKK SSPAATSSKP LHRVGSGGGS SAVMDAAEPG AEADSGGERR 60 AAAAGNKLPS SRYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR 120 DAVTNFRPLA ESDPDAAVEL RFLASRTKAE VVDMLRKHTY PDELSQFRRA FAAISPRPSP 180 PSPSPASNTL LSGSTAAARE HLFDKTVTPS DVGKLNRLVI PKQHAEKHFP LQISPATIAG 240 VSGGGGGGGE CKGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV 300 GFYRSAAAAA GKQAQLFIDC KLRRQKQQFP AAVKAIRLFG VDLLTAAAAS PEKHAGGKRG 360 MEAIAESQSK SQSHVVFKKQ CIELALT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-46 | 200 | 323 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G20600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807648.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
Swissprot | Q6L4H4 | 0.0 | Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A0D9WJD8 | 0.0 | A0A0D9WJD8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G20600.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-102 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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