PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G19870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 46383 Da PI: 8.2095 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.5e-16 | 74 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g LPERR05G19870.1 74 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 133 789******************888855666447*************************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 176 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g LPERR05G19870.1 176 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 227 89****************99966...3.6***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-12 | 74 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-16 | 74 | 142 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-24 | 75 | 147 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.809 | 75 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 75 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-11 | 176 | 227 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-24 | 176 | 235 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-17 | 176 | 236 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-26 | 177 | 241 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 177 | 235 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-17 | 177 | 235 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDHHSIMMVK SEIETYSGSS PAMIINAPEG GAEVGPVVRR RRRDPSLLAP INGETNGGAI 60 GKTSLTGITV KRSSRFRGVS RHRWTGRFEA HLWDKNSWNP TQRKKGKQVY LGAYDEEEAA 120 ARAYDLAALK YWGPTTYTNF PVMDYEKELK IMENLTKEEY LASLRRKSSG FSRGVSKYRG 180 VARHHQNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYKGVNA VTNFDLRSYI 240 TWLKPTPTPV AMNPEALAMQ IPADHFIPME THMMMIPQNN PFISDHNAPT LAGDGSGSSS 300 SNQEASMMIS PNGSRKRGSS TALSLLLKSS MFRQLVEKNP DAGEETGGEI SRELGAHPGE 360 GYEYHNFFQG VAAPEICDLL SSGNVHASSS VGFEGDIACF GDGDRTAWNG FGSMQSLQLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 107 | PTQRKKGKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G19870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685112 | 0.0 | AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692677.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D9WJ35 | 0.0 | A0A0D9WJ35_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G19870.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4162 | 34 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-79 | AP2 family protein |