PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G18480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 282aa MW: 29458.9 Da PI: 7.4656 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.6 | 9.7e-30 | 60 | 137 | 3 | 80 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++ + a++ s LPERR05G18480.1 60 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQHEIDKLPPLQFPPHDDLLAAAAAS 137 78*************************************************************999997663333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-26 | 61 | 123 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.866 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MERHNNDLPK MMISGSTTTN DELAGAGGRK AESGISKAAS SRHWSASTES RIVRVSRVFG 60 GKDRHSKVRT VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLIN AAQHEIDKLP 120 PLQFPPHDDL LAAAAASMAM PPPPSSAMQL DDDDDKAAVG GGGVKGFMSL SNSLGLLNAT 180 TMPTSVTMAH HGGGGGAYYA AGGGESWGNG QAAAAAAVHN SPFPSLLSLA PGSQFVFYSP 240 EGGGFAMKEA AVEHFAVDNL DHSQGQLSLS SARSFLHSGS QG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G18480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 1e-113 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961521.1 | 1e-103 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_004961522.1 | 1e-103 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_012700333.1 | 1e-103 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | A0A0D9WIK4 | 0.0 | A0A0D9WIK4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G18480.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |