PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G17110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 440aa    MW: 48977.1 Da    PI: 8.0476
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G17110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-0981121545
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      k  rr+++NReAA++sR+RKka++++Le+   +L++  ++L
  LPERR05G17110.1  81 KTLRRLAQNREAAKKSRLRKKAYVQQLENSRLKLTQLEQEL 121
                      6789************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-577146IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.94479123IPR004827Basic-leucine zipper domain
PfamPF001707.4E-781121IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.01E-681124No hitNo description
CDDcd147089.11E-2181133No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-782126No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
PfamPF141442.8E-31163238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MATDKCVLGV DTHSTPSWSA QDISAAMWRW EEFNMVYASP GTDASTDPDI DKNIRMFEQG  60
HLPTPITSDS SDKSKGKLGQ KTLRRLAQNR EAAKKSRLRK KAYVQQLENS RLKLTQLEQE  120
LQRARQQGII ISTSGEQHLS TSGNEALNFN MEYVRWLEEH NKQINELRTA VHTHAGDDDL  180
QNIVSTIMTH HEEIFRLKSL AAKSDAVHVL SGTWRTPLER CFLWLGGFRP SELLKLLVDQ  240
LEPLTEQQLA NICNQQQTSQ KSEETLSQGM EAIQRSLADT VASQLGRAGS SSSSGNTADH  300
TAEALEKIGA MESFLRQADD LRMQSLQKMQ RVLTTRQSAR ALLLASDYFS RIRALSSLWI  360
AREVRALLSL DWDRPLRATT ASKQIRDHAV AGAASRPRSV LFNGNCFSFP ATDGELGLVA  420
VEAAAAAATE EKHKTNRPVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G17110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881449.10.0transcription factor TGAL1-like isoform X1
SwissprotQ415581e-161HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D9WI310.0A0A0D9WI31_9ORYZ; Uncharacterized protein
STRINGLPERR05G17110.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169461111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-122TGACG motif-binding factor 6