PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G16930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 1100aa MW: 121518 Da PI: 6.0074 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 682 | 729 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++k++G ++Wk++ + g+ R++k+c++rw ++l LPERR05G16930.1 682 KGPWTPSEDAILEAYIKKHGERNWKSVQKNTGLLRCGKSCRLRWMNHL 729 79******************************99************96 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.2e-13 | 735 | 778 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++ ++G++ W+ ++ ++ gRt++++k++w++ LPERR05G16930.1 735 KGAFSKEEENKIIRLHYKMGNK-WAQMSAQLP-GRTDNEIKNYWNT 778 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51575 | 197.041 | 38 | 673 | IPR025794 | Histone H3-K9 methyltransferase, plant |
SuperFamily | SSF88697 | 7.95E-58 | 173 | 358 | IPR015947 | PUA-like domain |
SMART | SM00466 | 4.0E-76 | 186 | 342 | IPR003105 | SRA-YDG |
Pfam | PF02182 | 1.0E-45 | 190 | 342 | IPR003105 | SRA-YDG |
PROSITE profile | PS51015 | 56.444 | 191 | 338 | IPR003105 | SRA-YDG |
Gene3D | G3DSA:2.30.280.10 | 2.2E-52 | 202 | 368 | IPR003105 | SRA-YDG |
SuperFamily | SSF82199 | 1.05E-74 | 352 | 622 | No hit | No description |
SMART | SM00468 | 2.4E-26 | 367 | 461 | IPR007728 | Pre-SET domain |
Gene3D | G3DSA:2.170.270.10 | 1.1E-67 | 369 | 626 | No hit | No description |
Pfam | PF05033 | 2.8E-17 | 371 | 469 | IPR007728 | Pre-SET domain |
PROSITE profile | PS50867 | 11.109 | 413 | 474 | IPR007728 | Pre-SET domain |
SMART | SM00317 | 3.2E-39 | 477 | 627 | IPR001214 | SET domain |
PROSITE profile | PS50280 | 19.632 | 477 | 621 | IPR001214 | SET domain |
Pfam | PF00856 | 2.6E-23 | 488 | 621 | IPR001214 | SET domain |
PROSITE profile | PS51294 | 24.916 | 677 | 733 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-27 | 680 | 776 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 681 | 731 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 682 | 729 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 683 | 736 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.26E-12 | 684 | 729 | No hit | No description |
PROSITE profile | PS51294 | 17.041 | 734 | 784 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 734 | 782 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 735 | 778 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 737 | 782 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.50E-10 | 737 | 778 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034968 | Biological Process | histone lysine methylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005694 | Cellular Component | chromosome | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity | ||||
GO:0042393 | Molecular Function | histone binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1100 aa Download sequence Send to blast |
MGVNVSQSST PPLVCVTPVG QFPVGFGSGN LPAFGSTTTF TTTANGVSHA GTSANGPIDA 60 TPISAYKTRP GIVSLDDDNE PYSGTPNSKP KRGRPRKNSS GSTADGSNGV RFKRPKPVYK 120 NFVAGKELAF LPPASSDPRV IVETVHMTFE ALRRRHLQLD EIQEASKRAD LKAGAIMMAS 180 NIRANVGKRV GTVPGVEIGD IFYFRMELCI IGLHAPSMGG IDYMSAKFGT DEDSVAICIV 240 AAGGYENEDD DTDTLVYSGQ GGNSKNSEER QDQKLERGNL ALERSLHRKN EIRVVRGFRD 300 PFCLTGKIYI YDGLYKINES WKERTKSGIN CFKYKLLREP GQPDGAALWK MTQEWVDNPA 360 SRGRVILPDL SSGAEVLPVC LVNEVDHEKG PGHFTYASQV KYLRPLSSMK SLQGCECQSV 420 CLPGDVNCAC GQHNGGDLPY SSSGLLVCRK PIIYECGEAC HCSTNCRNRV TQKGVRFHFE 480 VFRTENRGWG LRCWDPIRAG AFICEYTGEV IDELKVNLDD SEDDYIFQTV CPGEKTLKWN 540 FGSELIGEES TYVSADEFEP LPIKISAKKM GNASRFMNHS CSPNVFWQPV QHDHGDDSHP 600 HIMFFALKHI PPMTELTYDY GVAGSETHGS GSMHACGNES DLVSDKMNWS TDNDGDGDSS 660 MDKHSSSGGT KPGGAVSPVL KKGPWTPSED AILEAYIKKH GERNWKSVQK NTGLLRCGKS 720 CRLRWMNHLR PDLKKGAFSK EEENKIIRLH YKMGNKWAQM SAQLPGRTDN EIKNYWNTRI 780 KKCKNILSLL YPADVCQQAL DEDQHESSDF GFREKLTNDS LYAPGFTCDK FNSHPQFSDA 840 SIKNILGQRF VDFASTFEIP LPPLNRTDNG IFPSANFLAN HGFTNDHFPT SRSITGPMKL 900 GLPSIQFAES HPDSWSMYPR TSATQLTNFA DVFMNSTSSP THSSHVAPKS SDQSEELLHE 960 VHPLNYVVKE ELYSGSLNPI VGVPCDAVTE PSEIDPCDEY REQDNDFYTL VESGFCAPSL 1020 FPSSLGNLQN SELSSAQTLI AGSNELLLPH YQGDASLLQE GFMPNTHYFN DINPSIFEGT 1080 DDLCMENIVD TKGHRLPDMS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4nj5_A | 1e-106 | 132 | 623 | 6 | 507 | Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G16930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC129718 | 0.0 | AC129718.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0088I06, complete sequence. | |||
GenBank | AK069035 | 0.0 | AK069035.1 Oryza sativa Japonica Group cDNA clone:J023004N15, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654577.1 | 0.0 | PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like | ||||
TrEMBL | A0A0D9WI03 | 0.0 | A0A0D9WI03_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G16930.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 1e-52 | myb domain protein 101 |