PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G16760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 393aa MW: 43774 Da PI: 6.8358 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.5e-34 | 25 | 79 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl LPERR05G16760.1 25 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 79 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.387 | 22 | 82 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-32 | 23 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.06E-17 | 24 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-23 | 25 | 80 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.2E-10 | 27 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.6E-22 | 126 | 173 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MERHLFLHGG NTQGDSGLVL STDAKPRLKW TPELHQRFVD AVNQLGGAEK ATPKTVMRLM 60 GIPGLTLYHL KSHLQKYRLS KNLQGQANVG TAKNALGCTA VADKIPGTST LAMASANVIP 120 PAEKTIQIGE ALQMQIEVQR QLNEQLEVQR HLQLRIEAQG KYLQAVLEQA QETLGKQNLG 180 PASLEDAKIK ISELVSQVSN ECLSNAVTEI RESSSIHRLE PRQIQFVESS AHNCLTAAEG 240 FIKEHRLQSH GVLKAYDDST LSCHKRSQDQ ETQYSLNRSL SERRMGHLYS GIEYHKAEGS 300 ESDTEVLHEY ITPQKNGGGS TTSSTSGSKE INVEKLYLDE PSCKRQAVDY QRESKLLDFE 360 QQSSGKKLDL NTHNIDDNDQ GYRHFDLNGF SWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-20 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 25 | 81 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 24 | 81 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G16760.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241362 | 0.0 | AK241362.1 Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654563.1 | 0.0 | PREDICTED: uncharacterized protein LOC102706285 | ||||
Refseq | XP_006654564.1 | 0.0 | PREDICTED: uncharacterized protein LOC102706285 | ||||
TrEMBL | A0A0D9WHY3 | 0.0 | A0A0D9WHY3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G16760.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12279 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 2e-96 | G2-like family protein |