PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G16760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 393aa    MW: 43774 Da    PI: 6.8358
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G16760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.5e-342579155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  LPERR05G16760.1 25 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 79
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.3872282IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-322380IPR009057Homeodomain-like
SuperFamilySSF466898.06E-172480IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-232580IPR006447Myb domain, plants
PfamPF002497.2E-102778IPR001005SANT/Myb domain
PfamPF143792.6E-22126173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MERHLFLHGG NTQGDSGLVL STDAKPRLKW TPELHQRFVD AVNQLGGAEK ATPKTVMRLM  60
GIPGLTLYHL KSHLQKYRLS KNLQGQANVG TAKNALGCTA VADKIPGTST LAMASANVIP  120
PAEKTIQIGE ALQMQIEVQR QLNEQLEVQR HLQLRIEAQG KYLQAVLEQA QETLGKQNLG  180
PASLEDAKIK ISELVSQVSN ECLSNAVTEI RESSSIHRLE PRQIQFVESS AHNCLTAAEG  240
FIKEHRLQSH GVLKAYDDST LSCHKRSQDQ ETQYSLNRSL SERRMGHLYS GIEYHKAEGS  300
ESDTEVLHEY ITPQKNGGGS TTSSTSGSKE INVEKLYLDE PSCKRQAVDY QRESKLLDFE  360
QQSSGKKLDL NTHNIDDNDQ GYRHFDLNGF SWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G16760.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413620.0AK241362.1 Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654563.10.0PREDICTED: uncharacterized protein LOC102706285
RefseqXP_006654564.10.0PREDICTED: uncharacterized protein LOC102706285
TrEMBLA0A0D9WHY30.0A0A0D9WHY3_9ORYZ; Uncharacterized protein
STRINGLPERR05G16760.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.32e-96G2-like family protein