PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G16610.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 451aa    MW: 47519.5 Da    PI: 5.7772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G16610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.23.6e-73854392374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        lL+ecA a+s g+l+ a+a++ +ls++asp++ +  +Rl+ayf+ A+a+rl+rs+ +l++  pp + +    ++  aa++++++v P+ +++
  LPERR05G16610.1  85 MALLMECAAAMSVGNLADANAAMLELSQTASPYAaSCGERLVAYFADAMASRLTRSWIGLASPPPPFPPP-CAAASINAAFRALHNVAPFARLA 177
                      579******************************96778***********************999999987.5677777899************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      +l+ N+aIl+a+ ge++vH++D+d+  G  lQW++Ll aLa+Rp+gpp s+R+Tg+g+++++s+ el+  g++La +A++l v+fef       
  LPERR05G16610.1 178 YLASNHAILDAFRGERHVHVVDLDAVPGgaLQWLSLLPALAARPGGPPrSIRVTGFGAASASSSSELRDAGSQLAALARKLCVSFEFCD----- 266
                      *************************987447*************88888*********9999*************************97..... PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklp 276
                               r + gEa+aV+++   h ++d          e +++v+ l+Pkvv++ve e+     ++++F erf++al++ysa+fd++ a  p
  LPERR05G16610.1 267 ----GGGGVRRRAGEAVAVHWHR--HAMYDG-------DGEAMRMVRWLEPKVVTLVEPEMAAsggGEGRFIERFVSALHHYSAVFDAMGAARP 347
                      ....345568899********98..777622.......346799****************7663346679*******************77777 PP

             GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpL 367
                        +   r+  E+ ++grei nv+a             ++ re le+ GF  +  +      a+++   ++ + gy+v  + +g++ lgWk+ pL
  LPERR05G16610.1 348 DGEdASRHLAEHGVFGREIANVLAGDVGG------GGGSLREELERNGFVRAGGGGG---RAQMVAGACPaGVGYTVAGDhDGTVRLGWKGTPL 432
                      76659999****************99887......89999**********9998875...67888999999999****66166666******** PP

             GRAS 368 vsvSaWr 374
                      ++vSaW+
  LPERR05G16610.1 433 YAVSAWT 439
                      ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.77158428IPR005202Transcription factor GRAS
PfamPF035141.2E-7085439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MQDSLGLMQF HDHHQYLYSN SSSSNLSLPQ PFLPLEPNEH CAGDDDVPEF DVEQPAAPDL  60
GACKEVFSDE ERTAAMEEAH GVRMMALLME CAAAMSVGNL ADANAAMLEL SQTASPYAAS  120
CGERLVAYFA DAMASRLTRS WIGLASPPPP FPPPCAAASI NAAFRALHNV APFARLAYLA  180
SNHAILDAFR GERHVHVVDL DAVPGGALQW LSLLPALAAR PGGPPRSIRV TGFGAASASS  240
SSELRDAGSQ LAALARKLCV SFEFCDGGGG VRRRAGEAVA VHWHRHAMYD GDGEAMRMVR  300
WLEPKVVTLV EPEMAASGGG EGRFIERFVS ALHHYSAVFD AMGAARPDGE DASRHLAEHG  360
VFGREIANVL AGDVGGGGGS LREELERNGF VRAGGGGGRA QMVAGACPAG VGYTVAGDHD  420
GTVRLGWKGT PLYAVSAWTW CPSPHGRTGL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-72704395379Protein SCARECROW
5b3h_A1e-72704394378Protein SCARECROW
5b3h_D1e-72704394378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G16610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638651.10.0protein SCARECROW
TrEMBLA0A0D9WHW60.0A0A0D9WHW6_9ORYZ; Uncharacterized protein
STRINGLPERR05G16610.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.17e-45GRAS family protein