PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G15070.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 412aa MW: 45649.3 Da PI: 7.3287 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 65 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av + g++Wk+Ia+ + Rt+ qc +rwqk+l LPERR05G15070.2 65 KGGWTPEEDETLRKAVDIYNGKNWKKIAQSCP-DRTEVQCLHRWQKVL 111 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 5.8e-19 | 117 | 163 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l LPERR05G15070.2 117 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 163 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 27.5 | 7.1e-09 | 169 | 204 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 + +WT eE+ l++a+ ++G++ W+ Ia+ ++ g t + LPERR05G15070.2 169 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GSTSN 204 579*******************.*********.86665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.584 | 60 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-14 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 65 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.46E-16 | 66 | 121 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 67 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-12 | 68 | 111 | No hit | No description |
PROSITE profile | PS51294 | 30.662 | 112 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.59E-27 | 114 | 206 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 116 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-17 | 117 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.82E-15 | 119 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 120 | 166 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-13 | 167 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.47 | 168 | 227 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 7.788 | 168 | 218 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-7 | 169 | 203 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.91E-5 | 171 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MLPAVKVEAV DGSGEGIQRN LMALSSASSA SEGSGYALTS PVTSSPADAS IFSSRRKSGP 60 VRRAKGGWTP EEDETLRKAV DIYNGKNWKK IAQSCPDRTE VQCLHRWQKV LNPELIKGPW 120 TQEEDDVIIN MVKKHGPKKW SVIARSLNGR IGKQCRERWH NHLDPQIRKE AWTVEEERVL 180 ARAHCMYGNK WAEIAKLLPG STSNILRVQL PAIGDDLKPS AENHIDLNKE PIIYSRDCQG 240 LVDHSDPTSD QQAMKMDSVH GETTGNNFLC GKVQRINLVV ENGFQTDQIS DKMGCSRLAK 300 REGEAVINGG ESSLQSEAHS VGFLCYENPK NEDTVPAQSP MFSAHYVPEH SRDEVHSPNG 360 YTTPSPTSRK GSDQLSVDSI LRSAAENFRE MTSNELKWVR PVASKVTVPE AK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-61 | 64 | 207 | 5 | 148 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-61 | 64 | 207 | 5 | 148 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G15070.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106756 | 1e-129 | AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655378.2 | 0.0 | PREDICTED: uncharacterized protein LOC102711889 | ||||
Swissprot | Q0JHU7 | 1e-118 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0D9WHB0 | 0.0 | A0A0D9WHB0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G15070.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 6e-87 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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