PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G15070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 450aa    MW: 49539.6 Da    PI: 6.7836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G15070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-1765111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av  + g++Wk+Ia+  +  Rt+ qc +rwqk+l
  LPERR05G15070.1  65 KGGWTPEEDETLRKAVDIYNGKNWKKIAQSCP-DRTEVQCLHRWQKVL 111
                      688*****************************.************986 PP
2Myb_DNA-binding59.76.5e-19117163148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++rw+++l
  LPERR05G15070.1 117 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 163
                      79******************************.*************97 PP
3Myb_DNA-binding27.47.9e-09169204138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      + +WT eE+  l++a+ ++G++ W+ Ia+ ++ g t +
  LPERR05G15070.1 169 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GSTSN 204
                      579*******************.*********.86665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.58460111IPR017930Myb domain
SMARTSM007178.7E-1464113IPR001005SANT/Myb domain
PfamPF002492.4E-1565111IPR001005SANT/Myb domain
SuperFamilySSF466896.1E-1666121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2267119IPR009057Homeodomain-like
CDDcd001679.10E-1368111No hitNo description
PROSITE profilePS5129430.662112167IPR017930Myb domain
SuperFamilySSF466896.39E-27114206IPR009057Homeodomain-like
SMARTSM007174.1E-17116165IPR001005SANT/Myb domain
PfamPF002494.7E-17117163IPR001005SANT/Myb domain
CDDcd001671.57E-15119163No hitNo description
Gene3DG3DSA:1.10.10.601.2E-25120166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-13167204IPR009057Homeodomain-like
SMARTSM007170.47168227IPR001005SANT/Myb domain
PROSITE profilePS512947.788168218IPR017930Myb domain
PfamPF002491.6E-7169203IPR001005SANT/Myb domain
CDDcd001675.69E-5171204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MLPAVKVEAV DGSGEGIQRN LMALSSASSA SEGSGYALTS PVTSSPADAS IFSSRRKSGP  60
VRRAKGGWTP EEDETLRKAV DIYNGKNWKK IAQSCPDRTE VQCLHRWQKV LNPELIKGPW  120
TQEEDDVIIN MVKKHGPKKW SVIARSLNGR IGKQCRERWH NHLDPQIRKE AWTVEEERVL  180
ARAHCMYGNK WAEIAKLLPG STSNILRVQL PAIGDDLKPS AENHIDLNKE PIIYSRDCQG  240
LVDHSDPTSD QQVSNLKNLK GCADYLSLGQ PVTPCEASVA DDSAIDPSTQ AMKMDSVHGE  300
TTGNNFLCGK VQRINLVVEN GFQTDQISDK MGCSRLAKRE GEAVINGGES SLQSEAHSVG  360
FLCYENPKNE DTVPAQSPMF SAHYVPEHSR DEVHSPNGYT TPSPTSRKGS DQLSVDSILR  420
SAAENFREMT SNELKWVRPV ASKVTVPEAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-61642075148MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-61642075148MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G15070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067561e-156AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655378.20.0PREDICTED: uncharacterized protein LOC102711889
SwissprotQ0JHU71e-124MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0D9WHA90.0A0A0D9WHA9_9ORYZ; Uncharacterized protein
STRINGLPERR05G15070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-86myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]