PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G14450.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 543aa    MW: 60257.4 Da    PI: 8.6661
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G14450.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-11233262433
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                       k e+r+++NReAAr+sR+RKka++++Le+
  LPERR05G14450.3 233 AKTEKRLAQNREAARKSRLRKKAYVQQLET 262
                      699*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-6230306IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243232276IPR004827Basic-leucine zipper domain
PfamPF001709.5E-8233263IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.9E-7234263No hitNo description
SuperFamilySSF579591.25E-6234277No hitNo description
PROSITE patternPS000360237252IPR004827Basic-leucine zipper domain
PfamPF141445.9E-28315389IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MYGPVAFQLR LGPCQKIAEV TACIFSGRSD HLAAAPPAVL AWPRPRPRPW PPPANPKKIH  60
SPLPPLAASE SMSPSRFYCQ SRSSRLDRSP GKCRIGLQYK SQTGEAKKLK TSAFAAGYIA  120
ARPPTLEIFP SWPMSHLQDP YSQNSQSVGS TTDSSSAQNT MSQAELVSPV SVRSDSGHEQ  180
QQQEVLMVTI DDYNYKQGLG AAIATAPSFQ QHAGGLDMRK HGSTRKDGKL LDAKTEKRLA  240
QNREAARKSR LRKKAYVQQL ETSRIRLQQI EQELQRARSQ GLFPGGCSAP GDMSSGAVMF  300
DMEYTRWLDD DSKCMAELQG ALQAQLPDGN LGAIVEECML HYDELFHLRA VLANSDVFHL  360
LTGMWAAPAE RCFLWMAGFR PSKILKMLIP QLDPLTEQQL MGMCGLQQSS EQTEEALAQG  420
LHQLHQSLAD AVGAGPLNDG ADVANYTALM ALALGRLENL ESFYRQADNL RQETLHHMRR  480
ILTTRQTARC FLSIGEYHRR LRALSSLWAS RPRENFITAE NVSPTGTEFQ VIQQSQQNQF  540
SGF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G14450.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095200.0AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881199.10.0transcription factor TGAL5 isoform X13
RefseqXP_025881200.10.0transcription factor TGAL5 isoform X13
RefseqXP_025881201.10.0transcription factor TGAL5 isoform X13
RefseqXP_025881202.10.0transcription factor TGAL5 isoform X13
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A0D9WH310.0A0A0D9WH31_9ORYZ; Uncharacterized protein
STRINGLPERR05G14450.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-136bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]