PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G13320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 409aa    MW: 44394.4 Da    PI: 6.4515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G13320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33.1e-49491742128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++  +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +  +
  LPERR05G13320.1  49 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVMGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGE 141
                      79***************************.89***************7777799**************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy+g+apkg++++W+m+eyrl
  LPERR05G13320.1 142 NSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 174
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5748197IPR003441NAC domain
PROSITE profilePS5100554.90348197IPR003441NAC domain
PfamPF023651.8E-2450174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSSSRDDADD GSFATIGEGR GSGEEEAAAG EAADGNAAAG DSHENDLVMP GFRFHPTEEE  60
LIEFYLRRKV EGRRFNVELI TFLDLYRFDP WELPAMAVMG EKEWFFYVPR DRKYRNGDRP  120
NRVTASGYWK ATGADRMIRG ENSRPIGLKK TLVFYSGKAP KGVRSSWIMN EYRLPPPAAD  180
ADLFYKSEIS LCRVYKRSGI DDQRLSTSNV QASTSSTGRQ QRSSPSTSST PLSSPPPPPT  240
QQQQQQHPIF HHLLQGECSS PSSSSLPASA AATRNASHLM PPPPPRPPAV VAPIEISAAA  300
STYSLLSMAH HVHVAAGSSS TSAIDELGTL IGHGYGNNHH TAAGGRQFIP LPPPPLPLPL  360
PQLMPHQQGT LPVSPLEAAV SDKLWDWNSV PDDDTAARDY GSSGLSDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-555019719165NO APICAL MERISTEM PROTEIN
1ut4_B2e-555019719165NO APICAL MERISTEM PROTEIN
1ut7_A2e-555019719165NO APICAL MERISTEM PROTEIN
1ut7_B2e-555019719165NO APICAL MERISTEM PROTEIN
4dul_A2e-555019719165NAC domain-containing protein 19
4dul_B2e-555019719165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G13320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029021e-174AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655332.11e-157PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0D9WGL20.0A0A0D9WGL2_9ORYZ; Uncharacterized protein
STRINGLPERR05G13320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-96NAC domain containing protein 35