PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G13240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 25730.4 Da PI: 7.3885 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.1 | 2.9e-38 | 53 | 135 | 1 | 83 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vg + LPERR05G13240.1 53 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGAAAAA 135 7*****************************************************************************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.14 | 52 | 153 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-38 | 53 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MASSSASSLP LSSGSVITVS SSSAVGASSG NTATASAGAG GGVAGSGAGT GSPCAACKFL 60 RRKCQPDCVF APYFPPDNPQ KFVHVHRVFG ASNVTKLLNE LHPYQREDAV NSLAYEADMR 120 LRDPVYGCVG AAAAAAVSSS NGQSPAAMAD FIGSTVPNCT QNFINGSHTV VAASAIGGGF 180 VHDNQFATVQ MLTRSYDGGE NAVARLGGAV NGGGGGYEYG YSSTMNGGGG GPMSGLGPLG 240 GGTFLKPGTT GCGGERPTAA Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-46 | 44 | 131 | 2 | 89 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-46 | 44 | 131 | 2 | 89 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G13240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY795560 | 1e-112 | AY795560.1 Triticum aestivum AS2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640070.1 | 1e-102 | LOB domain-containing protein 6 | ||||
Refseq | XP_015640071.1 | 1e-102 | LOB domain-containing protein 6 | ||||
Refseq | XP_025881387.1 | 1e-102 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 8e-88 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A0D9WGK1 | 0.0 | A0A0D9WGK1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G13240.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-50 | LBD family protein |