PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G13140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 292aa    MW: 32659.7 Da    PI: 4.5311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G13140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.43.1e-41101381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp GfrF+Ptdeel v+yL++++ g+  ++  +i++vdiy+++Pw+Lp+++  +e+ewyfF++rd++y+++ r+n ++ sg+W+a g+dk++ +
  LPERR05G13140.1  10 LPTGFRFQPTDEELAVNYLQRRTVGQLSPI-PIIADVDIYSFNPWELPSMALLGEHEWYFFTPRDHRYPNSVRPNHSAPSGFWRAIGTDKPIQV 102
                      699***********************9999.88***************76667999*************************************9 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ + ++k+Lvfy gr+p   kt+W+mheyrl
  LPERR05G13140.1 103 GgvQDAPIATRKSLVFYIGRTPMEIKTTWIMHEYRL 138
                      7556666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-513167IPR003441NAC domain
PROSITE profilePS5100550.22210168IPR003441NAC domain
PfamPF023656.3E-2211138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAMQLPVPIL PTGFRFQPTD EELAVNYLQR RTVGQLSPIP IIADVDIYSF NPWELPSMAL  60
LGEHEWYFFT PRDHRYPNSV RPNHSAPSGF WRAIGTDKPI QVGGVQDAPI ATRKSLVFYI  120
GRTPMEIKTT WIMHEYRLTN TRGATISSSP TGTTPYPNEW VLCKIFNNAL LPDNSPPTNV  180
ARSEGHPPSP LGNPLPVGFI IENNNNMLFP IQEGQEGTFS QAHQHHQPVP AIFPNLEPPG  240
TGNNPSLNGV AAAVADNGRL DEEDTSAYTF SDQEMEQMLM DLMDQDFFKD EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-521016815168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G13140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638459.11e-117NAC transcription factor 25
SwissprotD2SMN42e-56NAMB1_HORVS; NAC transcription factor NAM-B1
SwissprotQ8GY422e-56NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0D9WGJ00.0A0A0D9WGJ0_9ORYZ; Uncharacterized protein
STRINGLPERR05G13140.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162071212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-58NAC domain containing protein 25
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]