PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G13140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 32659.7 Da PI: 4.5311 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.4 | 3.1e-41 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp GfrF+Ptdeel v+yL++++ g+ ++ +i++vdiy+++Pw+Lp+++ +e+ewyfF++rd++y+++ r+n ++ sg+W+a g+dk++ + LPERR05G13140.1 10 LPTGFRFQPTDEELAVNYLQRRTVGQLSPI-PIIADVDIYSFNPWELPSMALLGEHEWYFFTPRDHRYPNSVRPNHSAPSGFWRAIGTDKPIQV 102 699***********************9999.88***************76667999*************************************9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + ++k+Lvfy gr+p kt+W+mheyrl LPERR05G13140.1 103 GgvQDAPIATRKSLVFYIGRTPMEIKTTWIMHEYRL 138 7556666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-51 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.222 | 10 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-22 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MAMQLPVPIL PTGFRFQPTD EELAVNYLQR RTVGQLSPIP IIADVDIYSF NPWELPSMAL 60 LGEHEWYFFT PRDHRYPNSV RPNHSAPSGF WRAIGTDKPI QVGGVQDAPI ATRKSLVFYI 120 GRTPMEIKTT WIMHEYRLTN TRGATISSSP TGTTPYPNEW VLCKIFNNAL LPDNSPPTNV 180 ARSEGHPPSP LGNPLPVGFI IENNNNMLFP IQEGQEGTFS QAHQHHQPVP AIFPNLEPPG 240 TGNNPSLNGV AAAVADNGRL DEEDTSAYTF SDQEMEQMLM DLMDQDFFKD EE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-52 | 10 | 168 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}. | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G13140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638459.1 | 1e-117 | NAC transcription factor 25 | ||||
Swissprot | D2SMN4 | 2e-56 | NAMB1_HORVS; NAC transcription factor NAM-B1 | ||||
Swissprot | Q8GY42 | 2e-56 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0D9WGJ0 | 0.0 | A0A0D9WGJ0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G13140.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16207 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-58 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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