PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G13030.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 326aa MW: 32353.9 Da PI: 7.126

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G13030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	1.9e-30	103	156	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl LPERR05G13030.1 103 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 156 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-20	100	160	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	100	159	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-30	102	161	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-24	104	156	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	106	155	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MREEEEPSWF ARWEEQLPAP DELMPLSQSL ITPDLAVAFD IPTAHGGGGG AAGLGIDGAG 60 GGGGGGLGAG EMNGGASSAA GSSGGGGGGG GGGGDEPART LKRPRLVWTP QLHKRFVDAV 120 AHLGIKNAVP KTIMQLMSVD GLTRENVASH LQKYRLYLKR MQGVGNGGGG GGGGGGGGGA 180 GGSHSSGSGT DAATEHLFAT GPVPFLPPGR APAGGDPYPP FAPMAAHHHH HHHPSQIGHF 240 HHPAARPLGH YGSGPGAGFD HGFLSRAVAG GGPPVGVGPP GMHHRLVPAM MAPSSFSDEL 300 ELGSRGGGGG GGGRRELTLF PTSGDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-33	103	159	1	57	Transcription factor LUX
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	313	RGGGGGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G13030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130607	0.0	AC130607.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0017D10, complete sequence.
GenBank	AC130729	0.0	AC130729.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0668F02, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640251.1	1e-127	transcription factor MYBC1
Swissprot	O22210	4e-56	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A0D9WGH9	0.0	A0A0D9WGH9_9ORYZ; Uncharacterized protein
STRING	LPERR05G13030.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1620	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-52	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]