PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G12280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 477aa    MW: 52719.6 Da    PI: 5.301
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G12280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.65e-17155207254
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYR 54 
                       r  Wt++ H++Fv+a ++L  +++A Pk+i++lm+++g+  t ++v SHLQkYR
  LPERR05G12280.1 155 DRFIWTTDAHSAFVRAYNHL--KDEAGPKRIKQLMELEGIfvTKSQVSSHLQKYR 207
                      6999****************..*****************65599*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-15152208IPR009057Homeodomain-like
SuperFamilySSF466893.23E-9153211IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-12156207IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDEMCVLCLA VFSEDEDVRT VMRAVLDGAC DYIVKPLTSD VTRRIWMHVL RWRLGALRPQ  60
ASSPSPSIDR QPAATAPPLA LTWNRRDGGQ DAELAPQPLP VPEGNMVGVV AGSSRGENSQ  120
QAAAKAALKK KGAMEVSDEG SNNFEPTQER KKARDRFIWT TDAHSAFVRA YNHLKDEAGP  180
KRIKQLMELE GIFVTKSQVS SHLQKYRGWL ETRNNHQVGR SPYVLLNNYN INDVISHCHL  240
KRNSILTEGP LTGMFSRRPV HSIATSNGRP ATSQSHYEGV GHKEIDNFIS NHQTYQGTAI  300
SHGSVIRHAS FRSEVTSAGH DGIAQASTSA MRQPTQTSQN CAANLRAIND PKPITQEMSD  360
PQIAPASLGY SNDVMSDWTE ISRLDDLLDN DVLMNNLFDG DQLQQDVVTA LDETQEVTAF  420
HINNDFRSVQ SEGLNNDFPN YEITNGMNGA SGGDLTEGML NDPTLQGDDY DILNYLE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G12280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692588.11e-121PREDICTED: two-component response regulator ORR27-like
SwissprotQ75HW21e-117ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA0A0D9WG750.0A0A0D9WG75_9ORYZ; Uncharacterized protein
STRINGLPERR05G12280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-14response regulator 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]