PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G11460.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 493aa    MW: 53085.5 Da    PI: 6.8874
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G11460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS234.35.6e-721054913374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                        L +c+ea+++   + a+a La +  las dgd+ qR+a  f+eALa+   r + ++++al ++++++++   + +  a++ f  v+P+l+++
  LPERR05G11460.1 105 GHLRRCVEALATARSADADAELASVMRLASADGDAAQRMAVAFAEALARVAIRPWRGVSAALFATHDADNDgsPAVASEARHNFLAVCPLLRLA 198
                      57899*********************************************************888888888655566667777*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp.fefnvlvakrl 186
                       ++ N+ Il+a+ +++ +Hi+D++  +  QW+ L+  L sR +g p slR+T+v +   + ke +++ +  L++ A++ ++p fe +v v+++l
  LPERR05G11460.1 199 AVAVNELILDATRHDKLIHIVDIGGVNHSQWMELIAFLGSRWQGRPtSLRLTVVIK---EPKEFYSQAATMLTDEATRHRLPsFELDV-VESSL 288
                      ******************************************88777******999...589999***************966****9.799** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll...........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                      e+l++++L v+++ a+++ + lqlhrl+           + +vs +s  d++L+ + ++sP++++++e+ea h ++ F erf+ al+yy  lf 
  LPERR05G11460.1 289 EALKMDDLGVRTDHAVVIVSTLQLHRLVgtrsiasssssSVPVSASSLADDLLRGFHRVSPRIIIITENEARHFGPGFRERFVLALDYYEQLFC 382
                      ************************************9888888899999********************************************* PP

             GRAS 270 sl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvk..sdgyrveeesgslv 359
                      s+ ea+l  +  er+ vEr++l++ei++++ace   + +rhe l +W +r++++GF   p+s   aa  ++++ +k +  ++gyrv e +g+l+
  LPERR05G11460.1 383 SMeEASLFCQPAERKAVERHFLKEEIKDIIACEDGPQWARHEPLDRWIARMGAVGFVFWPMSIVlAAGRVRSVAAKLPsgGHGYRVTEGDGWLI 476
                      **999999999**************************************************9752666788998888856788*********** PP

             GRAS 360 lgWkdrpLvsvSaWr 374
                      l  +++p++svS+W+
  LPERR05G11460.1 477 LNRMNKPMFSVSVWT 491
                      **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.59477468IPR005202Transcription factor GRAS
PfamPF035141.9E-69105491IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEKASSSSAP ANATKLTLGQ STDMPVPSFQ LFGATIETAA ASSAAASDIS AAATAASQNA  60
TIADATQGQD SLSLSLQPAA LSAPTMGPPA SRSNIAVERA AALRGHLRRC VEALATARSA  120
DADAELASVM RLASADGDAA QRMAVAFAEA LARVAIRPWR GVSAALFATH DADNDGSPAV  180
ASEARHNFLA VCPLLRLAAV AVNELILDAT RHDKLIHIVD IGGVNHSQWM ELIAFLGSRW  240
QGRPTSLRLT VVIKEPKEFY SQAATMLTDE ATRHRLPSFE LDVVESSLEA LKMDDLGVRT  300
DHAVVIVSTL QLHRLVGTRS IASSSSSSVP VSASSLADDL LRGFHRVSPR IIIITENEAR  360
HFGPGFRERF VLALDYYEQL FCSMEEASLF CQPAERKAVE RHFLKEEIKD IIACEDGPQW  420
ARHEPLDRWI ARMGAVGFVF WPMSIVLAAG RVRSVAAKLP SGGHGYRVTE GDGWLILNRM  480
NKPMFSVSVW TKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-241144909374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G11460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692579.11e-150PREDICTED: scarecrow-like protein 3
TrEMBLA0A0D9WFX20.0A0A0D9WFX2_9ORYZ; Uncharacterized protein
STRINGLPERR05G11460.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.14e-33RGA-like protein 3