PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G09930.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 457aa    MW: 49482.4 Da    PI: 4.4696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G09930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19152202155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa+a+++a+++++g
  LPERR05G09930.1 152 CDFRGVRQRT-WGKWVAEIREP---N-RlSRLWLGTFPTAEAAARAYDEAARAMYG 202
                      689****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.45E-17152210No hitNo description
PfamPF008471.6E-13152202IPR001471AP2/ERF domain
PROSITE profilePS5103222.445153210IPR001471AP2/ERF domain
SMARTSM003801.9E-36153216IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-20154210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-31154210IPR001471AP2/ERF domain
PRINTSPR003676.8E-10154165IPR001471AP2/ERF domain
PRINTSPR003676.8E-10176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MTMDQNTAVK APVEMPPVQP GSLTWFIQSL IRVCLFCLVF LVTRTCGGEA STGYLDSVEP  60
IAGALTCNEH ALLAQQTPKG DAPSVGSKMW KKRPRRSRDG PTSVAETIKL WAELNKELEH  120
DPKGPKRARK APAKGSKKGC MKGKGGPENT RCDFRGVRQR TWGKWVAEIR EPNRLSRLWL  180
GTFPTAEAAA RAYDEAARAM YGPLARTNFP GQHPPAAAAQ VASAVVHGVL PGGLPACESR  240
ASTQVVPAAV RDVLPDGLSA CESSTTTSNN HTDVASTLCK PEVSDISSPL RAPAIILEDG  300
SSYENKAEAV TYDENIVSQQ HGPPEAETSN GSGEELFEPL EPIASLPENQ GDECFDIDEM  360
LRMMEADPTN EGSWKAFPDV EGNRDGVDSM LELYQDEPFY FHGVDPDMLD SILSEPGPWS  420
ENPDMFISGG FDDAKSSEDP DMFISGGFDD AKFFEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-14154210360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-141542131575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G09930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881150.10.0dehydration-responsive element-binding protein 2B isoform X3
SwissprotQ5W6R41e-159DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0D9WFD00.0A0A0D9WFD0_9ORYZ; Uncharacterized protein
STRINGLPERR05G09930.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-30DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]