PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G09800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 490aa    MW: 51788.9 Da    PI: 7.5885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G09800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.7e-33197255260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g Hnh+k
  LPERR05G09800.1 197 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRITQIVYKGAHNHPK 255
                      8********************************************************85 PP
2WRKY105.72.3e-33359417159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d+++v++tYeg+Hnh+
  LPERR05G09800.1 359 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVITTYEGKHNHD 417
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-29191256IPR003657WRKY domain
PROSITE profilePS5081126.75191256IPR003657WRKY domain
SuperFamilySSF1182909.55E-26194256IPR003657WRKY domain
SMARTSM007741.0E-35196255IPR003657WRKY domain
PfamPF031061.2E-24197254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-36344419IPR003657WRKY domain
SuperFamilySSF1182903.27E-29351419IPR003657WRKY domain
PROSITE profilePS5081138.124354419IPR003657WRKY domain
SMARTSM007743.6E-39359418IPR003657WRKY domain
PfamPF031061.4E-25360417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASSTGGLDH GFTFTPPPFI TSFTELLSGG MGDMLAGAGA GGERSPRGFS SSRGVPKFKS  60
SQPPSLPLSP PPMSPSSYFA IPPGLSPTEL LDSPVLLSSS NILASPTTGA IPAQRYDWKA  120
SADLIASQSN NQDDVTTRGN GNDFSFHTNS DAMAAAAAAT NFPSFKAEQE QHQQQQVVAV  180
AAATSNKSSG NNNNKLEDGY NWRKYGQKQV KGSENPRSYY KCTYHSCSMK KKVERSLADG  240
RITQIVYKGA HNHPKPLSTR RNAGGAACAA AGDDAANDQY SAATPENSSV TFGDDEADNN  300
NGSHRSDGGD EPEAKRWKVE DGEENEGCSG GGIGGGGGAG KPVREPRLVV QTLSDIDILD  360
DGFRWRKYGQ KVVKGNPNPR SYYKCTTVGC PVRKHVERAS HDTRAVITTY EGKHNHDVPV  420
GRGGGGGGGR APAAAIRPSA VGAQQQQQQA GPYTLEMLPN HAAYGGGYGA AFQRTKDEPR  480
DDLFVESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-35196419877Probable WRKY transcription factor 4
2lex_A5e-35196419877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421429RGGGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G09800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1904361e-105AB190436.1 Oryza sativa Japonica Group OsWRKY53 mRNA for transcription factor OsWRKY53, complete cds.
GenBankAK1211901e-105AK121190.1 Oryza sativa Japonica Group cDNA clone:J023086B03, full insert sequence.
GenBankAY6769291e-105AY676929.1 Oryza sativa (indica cultivar-group) transcription factor WRKY53 (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640378.10.0probable WRKY transcription factor 26 isoform X2
SwissprotQ6B6R41e-108WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D9WFB00.0A0A0D9WFB0_9ORYZ; Uncharacterized protein
STRINGLPERR05G09800.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-89WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]