PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G09540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 295aa    MW: 32429.4 Da    PI: 4.4226
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G09540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.38.3e-25111431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...dk 90 
                      l pG+rF+P+d  lv +yL ++++g++l+l+ vi e+d ++++Pw+L +++  + ++ +fF++++ k+ +gkr++r +   g+W+ +      +
  LPERR05G09540.1  11 LLPGLRFDPSDGGLVGQYLLRRLQGQPLPLHGVILEADPLSAQPWKLLAEHGCDGDDAFFFAEARAKNGKGKRQKRtVEGGGFWQGQRIcvdGQ 104
                      579***************************99***************8777778899*******************555599**9765422223 PP

              NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++l+    + e  + k  L f+ ++++kg ++ Wvmhe+++
  LPERR05G09540.1 105 KLLVPdggGLEIAWRKYLLSFF-ADSEKG-SSGWVMHEFAV 143
                      3333355333336666677888.555565.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-308162IPR003441NAC domain
PROSITE profilePS5100526.97811162IPR003441NAC domain
PfamPF023654.3E-1413142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAATSEGAGV LLPGLRFDPS DGGLVGQYLL RRLQGQPLPL HGVILEADPL SAQPWKLLAE  60
HGCDGDDAFF FAEARAKNGK GKRQKRTVEG GGFWQGQRIC VDGQKLLVPD GGGLEIAWRK  120
YLLSFFADSE KGSSGWVMHE FAVTAPADLA ASPIRLYRVR FSGHGKKRKR EPQCPVNDGD  180
QERPAKAAHL LEDQNLSGVM MMGDDQLLPP DYLPGRIDGD MMPDLFVSRA DTGESSSSPD  240
NQNYDWFELP DSIEEMLNSC ASMEPDASCF GFTMDELFDG LPADYSVLEI ERDER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G09540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882797.12e-94NAC transcription factor 32
TrEMBLA0A0D9WF710.0A0A0D9WF71_9ORYZ; Uncharacterized protein
STRINGLPERR05G09480.10.0(Leersia perrieri)
STRINGLPERR05G09540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.17e-08NAC domain containing protein 5