PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family DBB
Protein Properties Length: 369aa    MW: 38303.8 Da    PI: 5.3463
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.42e-05442537
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ +e  e++  C  ++  lC  C    H        H
  LPERR05G05580.1  4 LCSACEAAEASVLCCADEAALCSRCDRDVHAAnrlagkH 42
                     7******99*****************9999544455555 PP
2zf-B_box185.9e-061111401437
         zf-B_box  14 lqlfCedCqqllCedClleeHkg......H 37 
                      + +fC +++ llC++C ++ H        H
  LPERR05G05580.1 111 AYFFCLEDRALLCRSCDVAVHTAnafvsaH 140
                      88*****************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.4E-7147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.324147IPR000315B-box-type zinc finger
CDDcd000213.52E-5347No hitNo description
SMARTSM003368.1E-8101145IPR000315B-box-type zinc finger
CDDcd000212.96E-5107145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MKVLCSACEA AEASVLCCAD EAALCSRCDR DVHAANRLAG KHLRLPLLGP AAANSSSSTA  60
ASPSPPPKCD ICQVSAWLFL GCGFLDLGLD LGIDFSPAAM AAVVVLQECH AYFFCLEDRA  120
LLCRSCDVAV HTANAFVSAH RRFLLTGVRV GQEQDDHSSA AADPPEPSPP PPPPAPTIYG  180
GGGRGGGGFR WDAADTPPAA AAASGLHDWS SVVNEQFGSP AQPLRHAETP VAKRSPRGAA  240
AAAFGGQGGM MDWPLGEFFG GFSDFNAGFG FGDSGTSKAD SGKLGGSTDG SPYYRSSSED  300
DRNDDELFGQ VPEIPWSVPE LPSPPTASGL HWQRRPAAGH AAGAAPDTVP DISLRQCFPA  360
AASKRRRQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068653e-93AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.11e-123B-box zinc finger protein 22
TrEMBLA0A0D9WDS00.0A0A0D9WDS0_9ORYZ; Uncharacterized protein
STRINGLPERR05G05580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-38light-regulated zinc finger protein 1