PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30646.5 Da    PI: 8.9641
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.2e-314797151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  LPERR05G05550.1 47 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 97
                     79***********************************************95 PP
2K-box104.71.2e-34114210399
            K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +s+++ ++e +a+++qqe+akLk++i nLq+++R l+G+++++++++eL+qLe +L+k+l +iR++Knell+++ie++q++e elq++n +L++
  LPERR05G05550.1 114 TSNSSTVAEINAQHYQQESAKLKQQITNLQNSNRTLVGDSITTMNHRELKQLEARLDKGLGRIRARKNELLCAEIEYMQRREMELQNDNVYLKS 207
                      34444499************************************************************************************** PP

            K-box  97 kle 99 
                      k+ 
  LPERR05G05550.1 208 KVV 210
                      986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.593999IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-403998IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-3341112IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-334161IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004195IPR002100Transcription factor, MADS-box
CDDcd002651.49E-4441113No hitNo description
PfamPF003191.1E-264895IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-336176IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-337697IPR002100Transcription factor, MADS-box
PfamPF014862.9E-25124209IPR002487Transcription factor, K-box
PROSITE profilePS5129714.22125215IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MHIYEEQDAE PSTGRMVKEV TAPSPGSGGL GSVGAEKIGS RGKIEIKRIE NTTNRQVTFC  60
KRRNGLLKKA YELSVLCDAE VALIVFSSRG RLYEYSNNSV KATIERYKKA NSDTSNSSTV  120
AEINAQHYQQ ESAKLKQQIT NLQNSNRTLV GDSITTMNHR ELKQLEARLD KGLGRIRARK  180
NELLCAEIEY MQRREMELQN DNVYLKSKVV ESERGLQTVN MMGSASTSEY VQNMIHYDPR  240
NFLQFNIMQQ PQYYPEQEDR KAFISDER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-1941126290Myocyte-specific enhancer factor 2A
3kov_B2e-1941126290Myocyte-specific enhancer factor 2A
3kov_I2e-1941126290Myocyte-specific enhancer factor 2A
3kov_J2e-1941126290Myocyte-specific enhancer factor 2A
3p57_A2e-1941126290Myocyte-specific enhancer factor 2A
3p57_B2e-1941126290Myocyte-specific enhancer factor 2A
3p57_C2e-1941126290Myocyte-specific enhancer factor 2A
3p57_D2e-1941126290Myocyte-specific enhancer factor 2A
3p57_I2e-1941126290Myocyte-specific enhancer factor 2A
3p57_J2e-1941126290Myocyte-specific enhancer factor 2A
5f28_A2e-1941126391MEF2C
5f28_B2e-1941126391MEF2C
5f28_C2e-1941126391MEF2C
5f28_D2e-1941126391MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2321570.0AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBankFJ7509420.0FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638060.11e-171MADS-box transcription factor 58 isoform X1
SwissprotQ2V0P11e-173MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A0D9WDR70.0A0A0D9WDR7_9ORYZ; Uncharacterized protein
STRINGLPERR05G05550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  7. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  8. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  9. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]