PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 386aa    MW: 42137.4 Da    PI: 7.9026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13193237554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h   Er+RR+++N++f  Lre+lP+a     +K +Ka+iL +A +Y+++L
  LPERR05G05410.1 193 HVLSERKRREKLNDSFKALREVLPPA-----TKKDKASILMRAKDYVNDL 237
                      7789*********************9.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-16180249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.936188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12190242No hitNo description
Gene3DG3DSA:4.10.280.109.5E-15192249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10193237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDGCSWMLQA SAVGGGEHDA VMQQQLSQIY MLMDMEEHND PYAGRVAPSP SSSSFHSGDS  60
SLILAAATTT STTTATSYHH HQQPEVSSQI PPPVYGTAVD VANPKESRQS AVASAGAFRP  120
YSRWLGPKRN ILRPGTGQRA FKKAICVLSK IHSARIAQYY QAMEMAAAAA QGRPSPATGS  180
SDDSNHQQLQ LQHVLSERKR REKLNDSFKA LREVLPPATK KDKASILMRA KDYVNDLKAR  240
IAELEEKNRM HVDVDKDEEC GDDKNTETGD KIEVDIDRSV EENATQVDKC QELHVKIVLG  300
SSSGCSAMDA VASILQGLND KRDNVSLLAM NTANVSSSGR LPHLKSSSPR PTVRLQVKSS  360
SCDKETLKES VVKVVREVIQ SEKVKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201ERKRRE
2197202RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076753e-71AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692999.11e-115PREDICTED: putative transcription factor bHLH041
TrEMBLA0A0D9WDQ10.0A0A0D9WDQ1_9ORYZ; Uncharacterized protein
STRINGLPERR05G05410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-17bHLH family protein