PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 294aa    MW: 31318.4 Da    PI: 10.1117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-14129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ +  +lG+g+W+ I+r+  ++Rt+ q+ s+ qky
  LPERR05G05230.1 129 PWTEEEHRMFLAGLDKLGKGDWRGISRHYVTTRTPTQVASHAQKY 173
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.002122178IPR017930Myb domain
SuperFamilySSF466891.72E-18123179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-18125177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-11126172IPR009057Homeodomain-like
SMARTSM007174.0E-11126176IPR001005SANT/Myb domain
CDDcd001671.02E-9129174No hitNo description
PfamPF002491.3E-11129173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG QRSFENSISS SSNNNSVATT ATTTALANSS SSLRLFGVQL  60
QVGGSSPLKK CLSMECLPSP AYYGAVASPS VSSSSSSLVS IEENTERVSS GYLSDGLMGR  120
AQERKKGVPW TEEEHRMFLA GLDKLGKGDW RGISRHYVTT RTPTQVASHA QKYFLRQNSL  180
TQKKRRSSLF DVVEGGKRAV MVMAASASAS ELQIPSMSLS IGAAKDEAIM PPSLNLMSSS  240
SGSQPSPSLT MLAKPQVQVQ LQMPDLELKM STSRLSDQSG PSPSTPFFGT IKVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654137.11e-153PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A0D9WDM70.0A0A0D9WDM7_9ORYZ; Uncharacterized protein
STRINGLPERR05G05230.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-48MYB_related family protein