PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G05170.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 41951.5 Da PI: 10.3031 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.7 | 9.4e-36 | 41 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 lp+G+rF+Ptd+el+ e+L +kv++ ++++ + ik +i++++P++Lp v+++ + +fF++++k+y+tg+rk+r+ LPERR05G05170.2 41 LPAGVRFDPTDQELI-EHLDAKVKDGGsgahplIDEFIHtIKGEdGICYTHPENLP-GVTKDGLSKHFFHRSAKAYTTGTRKRRKiladqpddq 132 799************.99******9997887774444444777756**********.555667799******************88******** PP NAM 78 .........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk++++++ +g+ +g+kk+Lv+y g+++k+ekt+Wvmh+y+l LPERR05G05170.2 133 qaasksthvAAETRWHKTGKTRPIMV-RGQPKGCKKILVLYtnFGKKRKSEKTNWVMHQYHL 193 *****988877899************.999***********54479999***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-36 | 33 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.245 | 41 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-16 | 42 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MNSDVSGSLG TKPDDDHRSS RRCPSCGHDL DCNKTFDMAG LPAGVRFDPT DQELIEHLDA 60 KVKDGGSGAH PLIDEFIHTI KGEDGICYTH PENLPGVTKD GLSKHFFHRS AKAYTTGTRK 120 RRKILADQPD DQQAASKSTH VAAETRWHKT GKTRPIMVRG QPKGCKKILV LYTNFGKKRK 180 SEKTNWVMHQ YHLGELEDEK EGDLIVSKVF YQTQTRSAVV AADLPVARQG GLLHGSVASS 240 GAAMAMNVQR QQHQVLKQAD GQLRPLPTKK RLHEDVVAQV RVNHGGEKRD HRYMPGQRHF 300 SLNLKATPVP TTSSTSSERL SQVSTLTTSI ERHNPLIPVV MGKQLHSPVR QFQSEHLHVG 360 KRFNSSTPKG RLASATLAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G05170.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242227 | 0.0 | AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence. | |||
GenBank | JQ088096 | 0.0 | JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637950.1 | 1e-176 | NAC domain-containing protein 75 isoform X2 | ||||
Swissprot | Q9M0F8 | 2e-96 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A0D9WDM1 | 0.0 | A0A0D9WDM1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G05170.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17425 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-90 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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