PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G03900.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24006.6 Da PI: 6.7966 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.5e-14 | 20 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+ ++++a +G + Wk+I + + ++t+ q++s+ qk+ LPERR05G03900.3 20 RERWSEEEHARFLHALMIFGRD-WKRIEAFVA-TKTAIQIRSHAQKH 64 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-16 | 14 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.558 | 15 | 69 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.9E-15 | 19 | 67 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.3E-10 | 19 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-11 | 20 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 20 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-8 | 22 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MVAMAGKKKQ RKPYTITRPR ERWSEEEHAR FLHALMIFGR DWKRIEAFVA TKTAIQIRSH 60 AQKHFLKARK FGLAGVMPPP LHPRRAADAL AAEMMPPWLP SAVAPPPPSA VQQSMTDWMP 120 ASYSPEAASF LPLIHSSECS FVEAPNCSGS GEAWITSDDA FLQDESILIP ISPDDLGFSE 180 VYKFVGDVFG SGEPRPVEAL LWRLQGMDPA ISETFS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G03900.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638954.1 | 1e-106 | protein REVEILLE 8 | ||||
TrEMBL | A0A0D9WD56 | 1e-156 | A0A0D9WD56_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G03900.2 | 1e-156 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-33 | MYB_related family protein |