PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G01890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TALE | ||||||||
Protein Properties | Length: 310aa MW: 33339.3 Da PI: 5.0175 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 243 | 276 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ LPERR05G01890.1 243 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 276 59*****************************885 PP | |||||||
2 | ELK | 33.1 | 1.2e-11 | 196 | 217 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ LPERR05G01890.1 196 ELKEMLLKKYSGCLSRLRSEFL 217 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 9.7E-21 | 50 | 94 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.2E-20 | 52 | 92 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.4E-25 | 102 | 153 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.5E-22 | 106 | 152 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.4E-8 | 196 | 217 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 196 | 217 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 196 | 216 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.681 | 216 | 279 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-20 | 218 | 287 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-14 | 218 | 283 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 221 | 281 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.60E-13 | 228 | 280 | No hit | No description |
Pfam | PF05920 | 5.2E-17 | 236 | 275 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 254 | 277 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEDLYSIHPG ISRGGGGAAS EASGVAGGGS SPPPPPPPAS SAAAAADLTE LMKAQIAGHP 60 SYPSLLSAYI ECRKVGAPPE VATLLEEIGR ERRNGGGGGG SAAVEIGIDP ELDEFMETYC 120 RVLERYKEEL SRPFDEAASF LTGIHSQLAT LCGGAAPAAT DNSDEMVGSS EDEPCSGDAD 180 AADFGQEHSS RLADHELKEM LLKKYSGCLS RLRSEFLKKR KKGKLPKDAR SALMDWWNTH 240 YRWPYPTEED KVRLAAMTGL DPKQINNWFI NQRKRHWKPS EDMRFALMEG VTGGSSSGTT 300 LYFDTGTIGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 211 | 220 | LRSEFLKKRK |
2 | 217 | 221 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G01890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007624 | 0.0 | AB007624.1 Oryza sativa Japonica Group HOS9 mRNA, partial cds. | |||
GenBank | AB028885 | 0.0 | AB028885.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete cds. | |||
GenBank | AK111878 | 0.0 | AK111878.1 Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567581.1 | 1e-170 | homeobox protein knotted-1-like 1 | ||||
Swissprot | A2Y007 | 1e-165 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 1e-165 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A0D9WCC3 | 0.0 | A0A0D9WCC3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G01890.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 8e-81 | KNOTTED1-like homeobox gene 6 |