PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G01520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 21226.4 Da PI: 6.4869 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 1.9e-42 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q ++lka+l LPERR05G01520.1 31 PCAACKILRRRCVDRCVLAPYFPPTDPHKFTTAHRVFGASNIIKLLQELPEENRADAVSSMVYEANARIRDPVYGCAGAICQLQKQANELKAQL 124 7********************************************************************************************* PP DUF260 95 allkee 100 a++++ LPERR05G01520.1 125 ARAQAD 130 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.869 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-42 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGSSSIDTAC TVDATTPTSP ATMATTVVMS PCAACKILRR RCVDRCVLAP YFPPTDPHKF 60 TTAHRVFGAS NIIKLLQELP EENRADAVSS MVYEANARIR DPVYGCAGAI CQLQKQANEL 120 KAQLARAQAD LAAARASHAH LVALLCMEMA ASASASPPPP TTPAAYSQLA AAAPVDALYV 180 VDGAGAAGAA MASPIGWVDE PLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 17 | 157 | 3 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 17 | 157 | 3 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G01520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638880.1 | 1e-104 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 3e-60 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 9e-60 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A0D9WC80 | 1e-145 | A0A0D9WC80_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G01520.1 | 1e-146 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-52 | LOB domain-containing protein 1 |