PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G00880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 348aa    MW: 36356.3 Da    PI: 8.8678
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G00880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.23.1e-37109167361
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      e  lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
  LPERR05G00880.1 109 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 167
                      56789************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3992166IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.789112166IPR003851Zinc finger, Dof-type
PfamPF027017.2E-32112166IPR003851Zinc finger, Dof-type
PROSITE patternPS013610114150IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MIFPPAFLDS SSWNDNNNQQ HQQQQQQQQQ QQQHAHAHAH GHHQHQLAAG CGNGGGGGDG  60
NSTGHELLQQ QQSIMAGSGG TLADGGGGGA AKPMSMSERA RIARIPLPEP GLKCPRCDST  120
NTKFCYFNNY SLSQPRHFCR ACRRYWTRGG ALRNVPVGGG YRRHAKRAKP KSAAAAASAS  180
GASTTTTTSS TCTTATATAN APPPPPQNLP AMLGSAGGNL SILPPLLRLA DFDAMSLGST  240
FSGAGAGMEQ WRFQQMQSFP FFHHAMDQAM AAAPAPATAM AMPGMFQLGL DGGGEDGGEF  300
HSHAMPSSKR DQAAAAAAGY PRGGMYGDHH LAGGYTSYSS ATTGNHLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G00880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0793564e-98AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence.
GenBankAK1089334e-98AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.
GenBankAP0149614e-98AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankGQ1835524e-98GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638255.11e-111dof zinc finger protein DOF3.6 isoform X1
SwissprotQ9M2U13e-48DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A0D9WBZ70.0A0A0D9WBZ7_9ORYZ; Uncharacterized protein
STRINGLPERR05G00880.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.13e-45OBF-binding protein 3