PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G00740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 1327aa MW: 151089 Da PI: 8.5695 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353.1 | 4.3e-108 | 355 | 727 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d la++l++++++++s dgd++qRla+y++ +L arla+ +s++ ++l +++ s +++ l+a++l+ ++P+ + s LPERR05G00740.1 355 LRSLLIQCAQAVAADDRILASELVKKIRQHSSADGDSNQRLAFYLVDGLDARLAGIGSQVHRKLMARRIS---TENMLKAYSLYLSACPFERAS 445 689***********************************************************99999998...789999*************** PP GRAS 95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 + aNq+Il+a +g+ ++vHi+Df+i G+QWp+L+q++a+ +++pp+lRiTg++ p++g + +eetg+rLa++A+ ++vpf+++ +a+ LPERR05G00740.1 446 FAFANQTILDASKGQqpRKVHIVDFGICTGFQWPSLIQQFAN-EGSPPKLRITGIDMPQPGfhPCKIIEETGKRLADYANLFKVPFQYQG-IAS 537 ***************999***********************9.6999*************9999999***********************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 r+e++++e+L+++++E+l++n+++++++l de+v+++s+rd+vLk+++ ++P+v+++ + +++s+ F +rf e l +ys+lfd+++a++pr+ LPERR05G00740.1 538 RWETIQIEDLNIDKDEVLIINCMFRMKNLGDETVAMNSARDRVLKTMRMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRD 631 ********************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +e+r+++Er ++g+++ n++acegaer+er e++++W++r +aGFk++p++ + k + + ++++ + + +e+ g+l++gWk+r ++++S LPERR05G00740.1 632 NETRKMLERGFFGKDALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKVIIDMKKEIYHEDFVADEDGGWLLQGWKGRVIYAIST 725 *******************************************************************999************************ PP GRAS 373 Wr 374 W+ LPERR05G00740.1 726 WK 727 *8 PP | |||||||
2 | GRAS | 368.8 | 7.2e-113 | 956 | 1325 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + lL++cA+a++ +++ a++lL++++ +asp+gd qRla +f+ +L+arla+++s++y+ l +++ts +++ l+a++l++ ++P+ + LPERR05G00740.1 956 RVLLIQCAQAIACSNHPFASELLKKIRLHASPHGDGSQRLANCFADGLEARLAGTGSQMYENLMAKQTS---TKDMLKAYHLYVVACPFEMV 1044 669****************************************************************99...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 ++ +N++I + ++g+ ++HiiDf+i G+QWp+L+q La+R++gpp+lRiTg++ p++g + ++eetg+rLa++A+ +gvpf+++ +a LPERR05G00740.1 1045 TYYFCNKTIIDVLKGKPALHIIDFGILFGFQWPCLIQRLAKREGGPPKLRITGIDVPQPGfrPHGRIEETGKRLAEYAHMFGVPFQYHG-IA 1135 ***********************************************************9*9***************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +r+e++ +e+Lr++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+v+ + ++s+ Fl+rf e l +ys+lfd+l++++ LPERR05G00740.1 1136 SRWETICIEDLRIDNDEVLIINCMSRMRKLGDETENIDSARDRVLRMMKRMNPEVFVLGVVNGLYSSPFFLTRFREVLFHYSSLFDMLDTNV 1227 ******************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 pr++e ri vE+ l+g+++ nvvacegaer+er e++++W++r+ +aGF++ p+++ + k + + +++d + ++e+sg+l++gWk+r + LPERR05G00740.1 1228 PRNHEGRILVEKDLFGNDALNVVACEGAERTERPESYKQWQMRILRAGFEQHPIDHAILKRSVHYKELYHED-FVIDEDSGWLLQGWKGRIM 1318 ************************************************************999999999966.******************* PP GRAS 368 vsvSaWr 374 ++S W+ LPERR05G00740.1 1319 HALSTWK 1325 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.755 | 329 | 707 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-105 | 355 | 727 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 63.632 | 929 | 1306 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-110 | 956 | 1325 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1327 aa Download sequence Send to blast |
MVIELPSDNQ YTITETQQTY DGSSSSSQQQ PSLYNYSLSN TQFFSQPATG SRTYLSGEVT 60 SPATYSDKNY LGQTQFQIDA GGNPEYQTIR SNNALYYISQ MLMEEVDERV SLHQGEAALQ 120 AAEKPFYDIL GQVYPPPRNR LPMHSANDPD ILDENASSSS SIYHSRLHNS HSNYKMLQPL 180 PTPLSPYSYG RSLFLPNQQL VSTAWTSKVC IPGLQMRRGV EEAKRFVPII DKFVIDLDTD 240 RLSISKMTTK AKVGDKKRYA IFEVTDQRSN PYIRDLDILE GRSSKRYAIT YCEIIRNEVF 300 DRVLLCYGVK NFTEASNLRE IMVKETSKNS LNGQNKGSQR KLRGKKQLKK DVVDLRSLLI 360 QCAQAVAADD RILASELVKK IRQHSSADGD SNQRLAFYLV DGLDARLAGI GSQVHRKLMA 420 RRISTENMLK AYSLYLSACP FERASFAFAN QTILDASKGQ QPRKVHIVDF GICTGFQWPS 480 LIQQFANEGS PPKLRITGID MPQPGFHPCK IIEETGKRLA DYANLFKVPF QYQGIASRWE 540 TIQIEDLNID KDEVLIINCM FRMKNLGDET VAMNSARDRV LKTMRMMNPR VFILGIVNGS 600 YSSPFFITRF KEVLFHYSSL FDMIDANVPR DNETRKMLER GFFGKDALNI IACEGAERTE 660 RPESYKQWQA RCLKAGFKQL PVDPATLKVI IDMKKEIYHE DFVADEDGGW LLQGWKGRVI 720 YAISTWKPNE SFSDHIKKKV TRNNHNINQP DANKKATEKP FYDILGKVYP SSKETSDNGS 780 SNYHEHACSG SCSKDLVGSQ SAHSITTNWS SEFDCLVLQF RRGVEEAKNF VPNIEKLMDD 840 PEKNAFSACK QTTEATGQKS KHENNIRDHP HVEDLELKEA RNSKHLAISI SGIIRDEMFD 900 SVLLCNRQLP GEVAHLRGMM AKEAGDNPKK AQRKGYGQGQ RKPSSKKKHM EAIDLRVLLI 960 QCAQAIACSN HPFASELLKK IRLHASPHGD GSQRLANCFA DGLEARLAGT GSQMYENLMA 1020 KQTSTKDMLK AYHLYVVACP FEMVTYYFCN KTIIDVLKGK PALHIIDFGI LFGFQWPCLI 1080 QRLAKREGGP PKLRITGIDV PQPGFRPHGR IEETGKRLAE YAHMFGVPFQ YHGIASRWET 1140 ICIEDLRIDN DEVLIINCMS RMRKLGDETE NIDSARDRVL RMMKRMNPEV FVLGVVNGLY 1200 SSPFFLTRFR EVLFHYSSLF DMLDTNVPRN HEGRILVEKD LFGNDALNVV ACEGAERTER 1260 PESYKQWQMR ILRAGFEQHP IDHAILKRSV HYKELYHEDF VIDEDSGWLL QGWKGRIMHA 1320 LSTWKPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-48 | 359 | 1325 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G00740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693385.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9 | ||||
TrEMBL | A0A0D9WBY2 | 0.0 | A0A0D9WBY2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G00740.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-160 | GRAS family protein |