PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G00740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 1327aa    MW: 151089 Da    PI: 8.5695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G00740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.14.3e-1083557271374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d  la++l++++++++s dgd++qRla+y++ +L arla+ +s++ ++l +++ s   +++ l+a++l+  ++P+ + s
  LPERR05G00740.1 355 LRSLLIQCAQAVAADDRILASELVKKIRQHSSADGDSNQRLAFYLVDGLDARLAGIGSQVHRKLMARRIS---TENMLKAYSLYLSACPFERAS 445
                      689***********************************************************99999998...789999*************** PP

             GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                      +  aNq+Il+a +g+  ++vHi+Df+i  G+QWp+L+q++a+ +++pp+lRiTg++ p++g    + +eetg+rLa++A+ ++vpf+++  +a+
  LPERR05G00740.1 446 FAFANQTILDASKGQqpRKVHIVDFGICTGFQWPSLIQQFAN-EGSPPKLRITGIDMPQPGfhPCKIIEETGKRLADYANLFKVPFQYQG-IAS 537
                      ***************999***********************9.6999*************9999999***********************.7** PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      r+e++++e+L+++++E+l++n+++++++l de+v+++s+rd+vLk+++ ++P+v+++   + +++s+ F +rf e l +ys+lfd+++a++pr+
  LPERR05G00740.1 538 RWETIQIEDLNIDKDEVLIINCMFRMKNLGDETVAMNSARDRVLKTMRMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRD 631
                      ********************************************************************************************** PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                      +e+r+++Er ++g+++ n++acegaer+er e++++W++r  +aGFk++p++  + k +  + ++++ + +  +e+ g+l++gWk+r ++++S 
  LPERR05G00740.1 632 NETRKMLERGFFGKDALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKVIIDMKKEIYHEDFVADEDGGWLLQGWKGRVIYAIST 725
                      *******************************************************************999************************ PP

             GRAS 373 Wr 374
                      W+
  LPERR05G00740.1 726 WK 727
                      *8 PP

2GRAS368.87.2e-11395613252374
             GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93  
                       + lL++cA+a++ +++  a++lL++++ +asp+gd  qRla +f+ +L+arla+++s++y+ l +++ts   +++ l+a++l++ ++P+  +
  LPERR05G00740.1  956 RVLLIQCAQAIACSNHPFASELLKKIRLHASPHGDGSQRLANCFADGLEARLAGTGSQMYENLMAKQTS---TKDMLKAYHLYVVACPFEMV 1044
                       669****************************************************************99...899***************** PP

             GRAS   94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 
                       ++  +N++I + ++g+ ++HiiDf+i  G+QWp+L+q La+R++gpp+lRiTg++ p++g   + ++eetg+rLa++A+ +gvpf+++  +a
  LPERR05G00740.1 1045 TYYFCNKTIIDVLKGKPALHIIDFGILFGFQWPCLIQRLAKREGGPPKLRITGIDVPQPGfrPHGRIEETGKRLAEYAHMFGVPFQYHG-IA 1135
                       ***********************************************************9*9***************************.7* PP

             GRAS  184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 
                       +r+e++ +e+Lr++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+v+   +  ++s+ Fl+rf e l +ys+lfd+l++++
  LPERR05G00740.1 1136 SRWETICIEDLRIDNDEVLIINCMSRMRKLGDETENIDSARDRVLRMMKRMNPEVFVLGVVNGLYSSPFFLTRFREVLFHYSSLFDMLDTNV 1227
                       ******************************************************************************************** PP

             GRAS  276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 
                       pr++e ri vE+ l+g+++ nvvacegaer+er e++++W++r+ +aGF++ p+++ + k   +  + +++d + ++e+sg+l++gWk+r +
  LPERR05G00740.1 1228 PRNHEGRILVEKDLFGNDALNVVACEGAERTERPESYKQWQMRILRAGFEQHPIDHAILKRSVHYKELYHED-FVIDEDSGWLLQGWKGRIM 1318
                       ************************************************************999999999966.******************* PP

             GRAS  368 vsvSaWr 374 
                        ++S W+
  LPERR05G00740.1 1319 HALSTWK 1325
                       ******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.755329707IPR005202Transcription factor GRAS
PfamPF035141.5E-105355727IPR005202Transcription factor GRAS
PROSITE profilePS5098563.6329291306IPR005202Transcription factor GRAS
PfamPF035142.5E-1109561325IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1327 aa     Download sequence    Send to blast
MVIELPSDNQ YTITETQQTY DGSSSSSQQQ PSLYNYSLSN TQFFSQPATG SRTYLSGEVT  60
SPATYSDKNY LGQTQFQIDA GGNPEYQTIR SNNALYYISQ MLMEEVDERV SLHQGEAALQ  120
AAEKPFYDIL GQVYPPPRNR LPMHSANDPD ILDENASSSS SIYHSRLHNS HSNYKMLQPL  180
PTPLSPYSYG RSLFLPNQQL VSTAWTSKVC IPGLQMRRGV EEAKRFVPII DKFVIDLDTD  240
RLSISKMTTK AKVGDKKRYA IFEVTDQRSN PYIRDLDILE GRSSKRYAIT YCEIIRNEVF  300
DRVLLCYGVK NFTEASNLRE IMVKETSKNS LNGQNKGSQR KLRGKKQLKK DVVDLRSLLI  360
QCAQAVAADD RILASELVKK IRQHSSADGD SNQRLAFYLV DGLDARLAGI GSQVHRKLMA  420
RRISTENMLK AYSLYLSACP FERASFAFAN QTILDASKGQ QPRKVHIVDF GICTGFQWPS  480
LIQQFANEGS PPKLRITGID MPQPGFHPCK IIEETGKRLA DYANLFKVPF QYQGIASRWE  540
TIQIEDLNID KDEVLIINCM FRMKNLGDET VAMNSARDRV LKTMRMMNPR VFILGIVNGS  600
YSSPFFITRF KEVLFHYSSL FDMIDANVPR DNETRKMLER GFFGKDALNI IACEGAERTE  660
RPESYKQWQA RCLKAGFKQL PVDPATLKVI IDMKKEIYHE DFVADEDGGW LLQGWKGRVI  720
YAISTWKPNE SFSDHIKKKV TRNNHNINQP DANKKATEKP FYDILGKVYP SSKETSDNGS  780
SNYHEHACSG SCSKDLVGSQ SAHSITTNWS SEFDCLVLQF RRGVEEAKNF VPNIEKLMDD  840
PEKNAFSACK QTTEATGQKS KHENNIRDHP HVEDLELKEA RNSKHLAISI SGIIRDEMFD  900
SVLLCNRQLP GEVAHLRGMM AKEAGDNPKK AQRKGYGQGQ RKPSSKKKHM EAIDLRVLLI  960
QCAQAIACSN HPFASELLKK IRLHASPHGD GSQRLANCFA DGLEARLAGT GSQMYENLMA  1020
KQTSTKDMLK AYHLYVVACP FEMVTYYFCN KTIIDVLKGK PALHIIDFGI LFGFQWPCLI  1080
QRLAKREGGP PKLRITGIDV PQPGFRPHGR IEETGKRLAE YAHMFGVPFQ YHGIASRWET  1140
ICIEDLRIDN DEVLIINCMS RMRKLGDETE NIDSARDRVL RMMKRMNPEV FVLGVVNGLY  1200
SSPFFLTRFR EVLFHYSSLF DMLDTNVPRN HEGRILVEKD LFGNDALNVV ACEGAERTER  1260
PESYKQWQMR ILRAGFEQHP IDHAILKRSV HYKELYHEDF VIDEDSGWLL QGWKGRIMHA  1320
LSTWKPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-4835913258375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G00740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693385.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
TrEMBLA0A0D9WBY20.0A0A0D9WBY2_9ORYZ; Uncharacterized protein
STRINGLPERR05G00740.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-160GRAS family protein