PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 164aa MW: 18244.4 Da PI: 3.9603 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 46.9 | 8.9e-15 | 7 | 65 | 72 | 128 |
NAM 72 krknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++nr+t+sg W+ g++k++++ ++ + +k+++vfy g+ p ++kt+Wvmhey l LPERR05G00120.1 7 AQSNRMTSSGSWNPIGTNKNIFDVgnHEVPIAVKRVFVFYLGHLPLTTKTSWVMHEYCL 65 689*******************985555669**************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.739 | 1 | 94 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.28E-17 | 8 | 94 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-7 | 9 | 65 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MPAAQVAQSN RMTSSGSWNP IGTNKNIFDV GNHEVPIAVK RVFVFYLGHL PLTTKTSWVM 60 HEYCLTNPPR VAVPSSSIDP IPSEEMVLCK ISNKDLPEPP ILHRDILQFP PSGLYDVAYS 120 PILDLEPLEM EYLDVDIGDI DDDVTTDDSS DLDEEDINQN TTTT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G00120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625739.1 | 4e-48 | NAC domain-containing protein 48-like | ||||
TrEMBL | A0A0D9WBQ2 | 1e-116 | A0A0D9WBQ2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G00120.1 | 1e-117 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16540 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-14 | NAC domain containing protein 25 |