PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G26370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 837aa    MW: 94512.3 Da    PI: 6.8376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G26370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.5e-494075351129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++ +e+d+yk+ PwdLp k +++++++ewyfF++rdkky++g+r+nr+t++gyWkatgkd++v
  LPERR04G26370.1 407 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAASECDLYKFAPWDLPeKsSLQSKDREWYFFCPRDKKYSSGSRTNRSTEAGYWKATGKDRPV 499
                      79****************************.88**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  k+++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  LPERR04G26370.1 500 IY-KSQTVGMKRTLVFHLGKPPRGGRTDWVMYEYRLE 535
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030162.1E-1210182IPR004263Exostosin-like
SuperFamilySSF1019413.14E-59398557IPR003441NAC domain
PROSITE profilePS5100554.975407557IPR003441NAC domain
PfamPF023653.6E-26408534IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAGALNDKEI NHTYVKVLSQ MPYFRRSGGR DHIFVFPSGA GAHLFRSWAT FLNRSIILTP  60
EGDRTDKRGI SAFNTWKDII IPGNVDDSMV NPDKLAVKPI PLTKRKYLAN FLGRAQGKVG  120
RLQLVKLAKQ YPDKLESPEL KFSGPDKLGR IDYFKHLRNA KFCLAPRGES SWTLRFYESF  180
FVNVIDYTEV SIKWPASKIG LQLLEYLESI PDERVEEMIG RGREIRCLWV YAPDTEPCSA  240
MSAIMWELER KMRRFHQSAE TFWLHNRSIV NRDLVEFHQW RTPKGKPRPP GEGEDESEGG  300
REILRLTATG AASLPLLAAA RRLFAGQPAA ASIRPASHTL LRVILLLPRD VRRHQHRTTQ  360
LGFLPSLGAG LPPFALQMTL DTRKDYLCCG CSRRQHSLFL TMAKTSLPPG FRFHPTDVEL  420
TVYYLKRKLL GKHLRCNAAS ECDLYKFAPW DLPEKSSLQS KDREWYFFCP RDKKYSSGSR  480
TNRSTEAGYW KATGKDRPVI YKSQTVGMKR TLVFHLGKPP RGGRTDWVMY EYRLEDKELS  540
ASGIKLDACV LCKIFQKSGP GPKIGEQYGA PFNEEDWNEA NAEFSSFTLS VPSCALESII  600
GRSNRAGQQL PVSDNVESSL EPRSEVNDKL TVDGVCPDMS HTTSPGTPFD SIHTQQLAEI  660
ISCFSTDILN SAGRDGSLPD STADYDNDNE VLSDDGEAIF DELDEFYSQS DESISNHCDS  720
CGEDSVQPVL EVLETEQYLE LNDLSFSLAD DPDPCKLLLT TNLSDQSHLE LETRLEQESL  780
VDICNTSTIS TAGMAPITID VNQRWLCRCH FRHVVILLFA VYGSAFYSSS MKAVFRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4840355811169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G26370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681530.0AK068153.1 Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WBN30.0A0A0D9WBN3_9ORYZ; Uncharacterized protein
STRINGLPERR04G26370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP993277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-75NAC domain containing protein 82