PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G25240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 227aa    MW: 23596.1 Da    PI: 7.174
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G25240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.11.4e-3655113260
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                      k+++l+cprC stntkfCyynnys+sqPr+fC+aCrryWt+GG+lr+vPvGg++r+  +
  LPERR04G25240.1  55 KQQQLECPRCRSTNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPVGGATRRAAA 113
                      7899***************************************************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027015.8E-3357112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.88559113IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-2359106IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106197IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAPAVASSTL LSAAAAAAAS KKRPADSDAL PPIDSSPPPP QGDEEASTEK KQNQKQQQLE  60
CPRCRSTNTK FCYYNNYSTS QPRHFCRACR RYWTHGGTLR DVPVGGATRR AAAAKRRRVS  120
DDPSSSPSPP PPTSTTTTSD AYYADLPAAG AAGFPFLSDG AFLPQFGLAA AGVAAPAAFS  180
WQSVIADLYN CGIAPWDDGT AVAGAAACDG FTDIAGGLDL TWPPPGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114118KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G25240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448779.15e-70dof zinc finger protein DOF5.8
TrEMBLA0A0D9WB761e-161A0A0D9WB76_9ORYZ; Uncharacterized protein
STRINGLPERR04G25240.11e-162(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140472427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.12e-27Dof family protein