PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G25100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 31806 Da PI: 5.2249 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.8e-10 | 22 | 70 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrw 44 g WT e ++ + +av+ lG + W++Ia+ + g+t+++++ ++ LPERR04G25100.1 22 GVWTREQEKAFENAVATLGVDedeegdeMWEKIAEVVE-GKTAEEVRRHY 70 78************************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 39.7 | 1.1e-12 | 138 | 182 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky LPERR04G25100.1 138 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 182 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.503 | 19 | 78 | IPR017884 | SANT domain |
SMART | SM00717 | 5.9E-6 | 20 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-4 | 22 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-8 | 22 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-8 | 24 | 70 | No hit | No description |
SuperFamily | SSF46689 | 2.3E-9 | 24 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.605 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-16 | 133 | 188 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 135 | 185 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.9E-17 | 135 | 185 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 138 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-11 | 138 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.51E-10 | 138 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MAVEEASSSS GCEEGSGGGG GGVWTREQEK AFENAVATLG VDEDEEGDEM WEKIAEVVEG 60 KTAEEVRRHY GWLVEDVDGI ESGRVPLPVY ADGGGGAEEG SGGGGGKKGG GGGGGGGGHG 120 EKGSAAKSAE QERRKGIAWT EDEHRLFLLG LEKYGKGDWR SISRNFVISR TPTQVASHAQ 180 KYFIRLNSMN RERRRSSIHD ITSVNNGDAS GAQGPITGQA NGQAANPGKS SKQSPQPANA 240 PPGVDAYGTT IGQPVGGPLV SAVGTPVLPV PAAPHIAYGM HAPVPGAVVP GAPVNMPPMP 300 YPMPPPTSHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 15 | 98 | 2 | 81 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 112 | GGKKGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G25100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068623 | 0.0 | AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence. | |||
GenBank | AK106166 | 0.0 | AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636999.1 | 1e-153 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-103 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0D9WB58 | 0.0 | A0A0D9WB58_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G25100.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-80 | MYB family protein |
Publications ? help Back to Top | |||
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