PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G24240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 420aa    MW: 45780.9 Da    PI: 7.614
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G24240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.8e-33241295155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+
  LPERR04G24240.1 241 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 295
                      68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.662238298IPR017930Myb domain
SuperFamilySSF466898.6E-18239295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-30240296IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-24241296IPR006447Myb domain, plants
PfamPF002497.7E-9245294IPR001005SANT/Myb domain
PfamPF143798.2E-22326372IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNTKKIKLHE CHFGMSPLCD TSPATSQLLT SAAAAGLSFR PGLVRSSAQH HQQQHGGWLH  60
DEYAARSSSP LLAQTCVGSN AAAFYAAENL LGMAQFDCAG GLGTAAAAAA IAAKTAFRSP  120
ESEMYRPVEP LLLRADHSSV RTYYVRPRDA GEPTPLPPPP PSQQRQERLH GLFAGVPTTT  180
RLLTGEPKIH PFSPQVTAKP ILPAMEAPSL QNQMENQLSR SCISAATPVT STAGSSGAPS  240
KTRIRWTQDL HERFVDCVNQ LGGADKATPK GILKLMNSDG LTIYHIKSHL QKYRIAKYMP  300
ASSEGKQQEK KAAGNDMQNL DPKTGMQITE ALRVQLDVQR RLHEQLEIQR NLQLKIEEQG  360
KRLQKMFEDQ MKASRSVMEP QELDVVAFAG DEAFDDDLQL LDVAGNGCGF DDDGFPSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-22241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22241298259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G24240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636269.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636270.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636271.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636272.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_025880593.10.0uncharacterized protein LOC4337318 isoform X1
TrEMBLA0A0D9WAU70.0A0A0D9WAU7_9ORYZ; Uncharacterized protein
STRINGLPERR04G24240.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-66G2-like family protein