PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G23560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 148aa    MW: 15588.2 Da    PI: 4.794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G23560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19252155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr++  +g+Wv+eIr+p +   ++r++lg++ tae+Aa+a+++a++ + g
  LPERR04G23560.1  2 PRYKGVRQRN-WGSWVSEIRHPLQ---KTRIWLGTYETAEDAARAYDEAARIMSG 52
                     68*****998.**********743...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.15E-28260No hitNo description
PfamPF008471.7E-12249IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-21361IPR016177DNA-binding domain
SMARTSM003801.5E-35366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-33361IPR001471AP2/ERF domain
PROSITE profilePS5103221.325360IPR001471AP2/ERF domain
PRINTSPR003671.1E-10415IPR001471AP2/ERF domain
PRINTSPR003671.1E-102642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPRYKGVRQR NWGSWVSEIR HPLQKTRIWL GTYETAEDAA RAYDEAARIM SGPAARTNFP  60
LVDGAAAGSC LSPTLRARLE QCCAKDSSSS ASASQGGAKA ATGGVAGEEN EAAAAAATGG  120
GDGEEDYIDE MIRELTFYGS IEIVHSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17461664ATERF1
3gcc_A6e-17461664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G23560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064466e-55AL606446.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence.
GenBankAL6066856e-55AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence.
GenBankAP0149606e-55AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126126e-55CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551366e-55CR855136.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635341.12e-59ethylene-responsive transcription factor ERF003
RefseqXP_022680905.12e-59ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-40ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0D9WAI71e-103A0A0D9WAI7_9ORYZ; Uncharacterized protein
STRINGLPERR04G23560.11e-104(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-20ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]