PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G22430.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 450aa    MW: 50576.3 Da    PI: 6.9283
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G22430.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-11159197341
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                      ++k+ rr+++NReAAr+sR+RKka+i++Le+   +L + 
  LPERR04G22430.2 159 PDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLKLAQL 197
                      789***************************854444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.8E-8155206No hitNo description
SMARTSM003381.1E-10157221IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.933159203IPR004827Basic-leucine zipper domain
PfamPF001706.0E-8159199IPR004827Basic-leucine zipper domain
CDDcd147087.13E-22161210No hitNo description
SuperFamilySSF579597.03E-7161206No hitNo description
PROSITE patternPS000360164179IPR004827Basic-leucine zipper domain
PfamPF141444.2E-26249323IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MTVAAHFLAE KKTASATATW GSAVAFNNAA ISEHGSIEPC RKYSIGGDQF KNDIMELYPG  60
YLEDHFNIHK LSISSASPPE YMTLASTQFA APVRMGAYDR PPPVGMWSHE QFKVDNGQAT  120
SASTIMESEM KYEARLEEVP QVVLDQEARN VDQEASKSPD KVLRRLAQNR EAARKSRLRK  180
KAYIQQLETS RLKLAQLEQE LQRARQQSVY ANGGLREPNL GFTGAIDPGA VNFEIEYSHW  240
VDEQNRNTGE LRNALLQAQT TEDELKLLVE IGLENYSRLF NIKKDAANSD VFYVMSGMWK  300
TPTERFFLWI GGFRPSEVLK NLRPQLEPLL EHQIVSVNGL QHSSMQAEDA LSQGMDKLKQ  360
TIADSLTAAD PFGSPDAYMV HMANAVEQLK SLVKFVIQAD HLRHTTLLEM RRILTTRQAA  420
RGLVALGDYL QRFRALSSLW TARPRDSGIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G22430.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737150.0AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636710.10.0transcription factor TGAL6 isoform X1
RefseqXP_015636711.10.0transcription factor TGAL6 isoform X1
RefseqXP_015636712.10.0transcription factor TGAL6 isoform X1
RefseqXP_025880677.10.0transcription factor TGAL6 isoform X1
SwissprotA0A0P0WFC80.0TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A0D9WA400.0A0A0D9WA40_9ORYZ; Uncharacterized protein
STRINGLPERR04G22430.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-117TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]