PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G20730.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27598.8 Da    PI: 8.1973
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G20730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849.2e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien +nrqvtfskRr g+lKKA+EL +LCda++ vi+fs tg++yeyss
  LPERR04G20730.1  9 KKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGRMYEYSS 59
                     68***********************************************96 PP
2K-box50.11.2e-17851571486
            K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                      +++  +e++++k+e++ L+    +++G+dL+sL+l++  +Leq++e sl k+  +K++ll +q+ e++++e  
  LPERR04G20730.1  85 QQKIIHEMTRMKDENNRLRIIMSQYMGDDLGSLTLQDVSNLEQHIEFSLYKVLLRKQQLLDQQLLEMRNREMP 157
                      678889****************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-30279IPR002100Transcription factor, MADS-box
CDDcd002651.02E-39276No hitNo description
PRINTSPR004044.7E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1481157IPR002487Transcription factor, K-box
PROSITE profilePS5129711.90885177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGLLK KANELAILCD AQIGVIVFSG TGRMYEYSSP  60
PWRIANIFDR YLKAPSTRFE EMDIQQKIIH EMTRMKDENN RLRIIMSQYM GDDLGSLTLQ  120
DVSNLEQHIE FSLYKVLLRK QQLLDQQLLE MRNREMPIPG DQSNYLCHMN LDQTQAAPMV  180
DPKPFPLWNV GSQVYNQDAE SSMTALQLSP QLQEHKLQPL QPNLQESNLQ GYVLRLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-17160160MEF2C
5f28_B8e-17160160MEF2C
5f28_C8e-17160160MEF2C
5f28_D8e-17160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G20730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1776980.0AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691696.11e-150PREDICTED: MADS-box transcription factor 31-like isoform X2
SwissprotQ84NC22e-94MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A0D9W9E11e-176A0A0D9W9E1_9ORYZ; Uncharacterized protein
STRINGLPERR04G20730.11e-176(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.34e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]