PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G20380.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 395aa    MW: 44264.2 Da    PI: 4.9209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G20380.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.5e-5061341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  LPERR04G20380.4   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSECDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 98 
                      79****************************.89**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  k++ vg+k+tLvf+ g+ p+g +tdWvm eyrle
  LPERR04G20380.4  99 IY-KSQSVGMKRTLVFHLGKPPRGGRTDWVMYEYRLE 134
                      **.9999****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-593156IPR003441NAC domain
PROSITE profilePS5100555.666156IPR003441NAC domain
PfamPF023651.7E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAVSE CDLYKFAPWD LPEKSSLQSK  60
DREWYFFCPR DRKYSSGSRT NRSTEAGYWK ATGKDRPVIY KSQSVGMKRT LVFHLGKPPR  120
GGRTDWVMYE YRLEDKELSA SGIKLDACVL CKIFQKSGPG PKIGEQYGAP FNEEDWNEAN  180
AEFSSFTLSV PSCALESSNG RSNRAGQQLP VSDNAESSLD FRSEDNDKLT VDGVCPGTSH  240
TTSPGTPFDS IHTHQLAEII SCFSTDLLNS VGRDGSLPDS TAEYDNDNEV LSDDGEAIFD  300
ELHSQSDESI SNHCDSCGED SVQPVLEVLE TEQYLELNDL SFSLTDDPNP CMAPVPVDLN  360
QRWLCRCHFR HVVIHLFAVY GSAFYSSSMK AVSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G20380.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681530.0AK068153.1 Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823524.11e-166NAC domain-containing protein 82-like
RefseqXP_025823525.11e-166NAC domain-containing protein 82-like
RefseqXP_025823526.11e-166NAC domain-containing protein 82-like
RefseqXP_025823527.11e-166NAC domain-containing protein 82-like
TrEMBLA0A0D9W9960.0A0A0D9W996_9ORYZ; Uncharacterized protein
STRINGLPERR04G20380.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-80NAC domain containing protein 82