PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G20380.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 44264.2 Da PI: 4.9209 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v LPERR04G20380.4 6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSECDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 98 79****************************.89**************95357788999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + k++ vg+k+tLvf+ g+ p+g +tdWvm eyrle LPERR04G20380.4 99 IY-KSQSVGMKRTLVFHLGKPPRGGRTDWVMYEYRLE 134 **.9999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.66 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-26 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAVSE CDLYKFAPWD LPEKSSLQSK 60 DREWYFFCPR DRKYSSGSRT NRSTEAGYWK ATGKDRPVIY KSQSVGMKRT LVFHLGKPPR 120 GGRTDWVMYE YRLEDKELSA SGIKLDACVL CKIFQKSGPG PKIGEQYGAP FNEEDWNEAN 180 AEFSSFTLSV PSCALESSNG RSNRAGQQLP VSDNAESSLD FRSEDNDKLT VDGVCPGTSH 240 TTSPGTPFDS IHTHQLAEII SCFSTDLLNS VGRDGSLPDS TAEYDNDNEV LSDDGEAIFD 300 ELHSQSDESI SNHCDSCGED SVQPVLEVLE TEQYLELNDL SFSLTDDPNP CMAPVPVDLN 360 QRWLCRCHFR HVVIHLFAVY GSAFYSSSMK AVSRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-52 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G20380.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068153 | 0.0 | AK068153.1 Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823524.1 | 1e-166 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823525.1 | 1e-166 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823526.1 | 1e-166 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823527.1 | 1e-166 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A0D9W996 | 0.0 | A0A0D9W996_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G20380.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-80 | NAC domain containing protein 82 |