PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19760.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRF
Protein Properties Length: 377aa    MW: 40838.6 Da    PI: 7.6141
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.7e-25114158145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  LPERR04G19760.1 114 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 158
                      79****************************************996 PP
2QLQ59.11.3e-205388237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  LPERR04G19760.1 53 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 88
                     9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-115288IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1875388IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.9E-145387IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.517114158IPR014977WRC domain
PfamPF088793.8E-21115157IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAMPFASLSP AADHRSAPSS IFPFCRSSPL SAVGEEAQQH MMGARWMAAR PPPFTAAQYE  60
ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC  120
RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQQ LVAPHSQPPS AAPAAAAFQN  180
HSLYPAIVNG GGGGGGGGGG GGSFGLGSNA QLHMDNAASY STAAGAGNKD FRYSAYGVRP  240
LADEHSPLMT GAMDSSIDNS WRLLPSQTST FSVSSYPLLG NLSDLDQNTI CSMPKVEREP  300
LSFFGSDYVT VDSEKQENQT LRPFFDEWPK ARDSWPELTD DNSLATFSAT QLSISIPMAT  360
SDFSTTSSRS PNGIYSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5466930.0FJ546693.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634332.10.0growth-regulating factor 3 isoform X1
RefseqXP_015634333.10.0growth-regulating factor 3 isoform X2
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A0D9W8Z60.0A0A0D9W8Z6_9ORYZ; Uncharacterized protein
STRINGLPERR04G19760.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-49growth-regulating factor 5