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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR04G19570.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
LFY |
Protein Properties |
Length: 374aa MW: 40810.4 Da PI: 8.3749 |
Description |
LFY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR04G19570.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FLO_LFY | 471.6 | 5.2e-144 | 1 | 363 | 1 | 386 |
FLO_LFY 1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmks 92
mdp++ fsa+ f+wd + +pa + + ++ a++ releel+ +yGvr +tva+i+elGft stL+ m+++eldd+m++
LPERR04G19570.1 1 MDPNDsFSAAhPFRWDLGPP---APAPVPPPPPPPP------PPPPANAPRELEELVAGYGVRLSTVARISELGFTSSTLLAMTERELDDMMAA 85
777655876559****5322...2223322222222......24556778******************************************** PP
FLO_LFY 93 lseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekk 186
l+ +fr+d+l+Ger+G++aa+raer rl++ + r +ls+++ d + + gl e+++ ++ ++ s++++++ ++++aa++k +++++k
LPERR04G19570.1 86 LTGLFRWDILLGERFGLRAALRAERGRLMSLS---GRFVVLSDEH----DMAGSGGLGEDENMRR--MMMSAKKQAKIKGSAAARNKGKKARRK 170
*****************************966...6665666654....5677888988877554..444444444444444444444444444 PP
FLO_LFY 187 kaskkkqkrkkkkelkse....ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGek 276
+ + + ++ ++ + +e++e++ + g+g +g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq++ak +G+k
LPERR04G19570.1 171 RVDDLRLDMREDDNDDGDedgcGGGGSESTESSAGGGGGGGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSMAKLHGHK 264
4444343333333322222222222334444455555778888*************************************************** PP
FLO_LFY 277 cPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYv 370
+Ptkv gasyinkPkmrhYvhCYalhcLdeeas+alrra+k+rgenvGawrqacy+plv+i+ar+g+didavf+ahprL+iWYv
LPERR04G19570.1 265 SPTKV-----------GASYINKPKMRHYVHCYALHCLDEEASDALRRAYKARGENVGAWRQACYAPLVDISARHGFDIDAVFAAHPRLAIWYV 347
***98...........9***************************************************************************** PP
FLO_LFY 371 PtkLrqLChlerskas 386
Pt+LrqLCh++rs+++
LPERR04G19570.1 348 PTRLRQLCHQARSTHA 363
************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0031490 | Molecular Function | chromatin DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MDPNDSFSAA HPFRWDLGPP APAPVPPPPP PPPPPPPANA PRELEELVAG YGVRLSTVAR 60 ISELGFTSST LLAMTERELD DMMAALTGLF RWDILLGERF GLRAALRAER GRLMSLSGRF 120 VVLSDEHDMA GSGGLGEDEN MRRMMMSAKK QAKIKGSAAA RNKGKKARRK RVDDLRLDMR 180 EDDNDDGDED GCGGGGSEST ESSAGGGGGG GGGERQREHP FVVTEPGEVA RAKKNGLDYL 240 FHLYEQCRLF LLQVQSMAKL HGHKSPTKVG ASYINKPKMR HYVHCYALHC LDEEASDALR 300 RAYKARGENV GAWRQACYAP LVDISARHGF DIDAVFAAHP RLAIWYVPTR LRQLCHQARS 360 THAAAAAALP PPLF
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB005620 | 1e-137 | AB005620.1 Oryza sativa mRNA for RFL gene, complete cds. |
GenBank | AF065992 | 1e-137 | AF065992.2 Oryza sativa floral meristem identity protein (OSL) gene, complete cds. |
GenBank | AP014960 | 1e-137 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CP012612 | 1e-137 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G61850.1 | 1e-86 | floral meristem identity control protein LEAFY (LFY) |