PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 348aa    MW: 36696.4 Da    PI: 6.7015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.8e-1486137155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s + + a+i+  A++++k+L+
  LPERR04G19210.1  86 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YSHRGDQASIVGGAIDFVKELE 137
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1984165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-1584141No hitNo description
PROSITE profilePS5088815.59385136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-1186137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1486155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-1191142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALDALCASA GDVLIYDTFN ASAAAAVVGA PPASFLFGGN AGGAAGTEAQ VAAAEEVEQK  60
PAAQAGRRKR RRRARSCKSR EDAESQRMTH IAVERNRRRQ MNEYLAVLRS LMPESYSHRG  120
DQASIVGGAI DFVKELEQLL QSLEAQKHTL LMQQQQPPPP PPPHQHHHTT TNCAAAAASD  180
TTNATSADQV TATAAAEPPP FARFFTYPQY VWRHHAAARV DGGGAAAEET SRGGAAAGVA  240
DIEVSLVETH ASVRVMAPRR PGQLLRMVTG LQALRLTVLH LNVTALASLA LYSISVKVEE  300
GCGMATVDDI AAAVHHVMCI IDAEAASQLL LAGEAGGNLV ADLPWPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672RRKRRRR
26771RKRRR
36774RKRRRRAR
48697RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629818e-78AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149608e-78AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126128e-78CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552358e-78CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637096.11e-131transcription factor bHLH94
TrEMBLA0A0D9W8T10.0A0A0D9W8T1_9ORYZ; Uncharacterized protein
STRINGLPERR04G19210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-28bHLH family protein