PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G18770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 463aa    MW: 51375.4 Da    PI: 6.6743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G18770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.8e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  LPERR04G18770.1  69 REKWTEEEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 113
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1563116IPR009057Homeodomain-like
PROSITE profilePS5129420.90864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-1066120IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-1567116IPR006447Myb domain, plants
SMARTSM007171.1E-1368116IPR001005SANT/Myb domain
PfamPF002497.4E-1569112IPR001005SANT/Myb domain
CDDcd001671.01E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAGSGIQFLE MARFQETKAM NDQGPLADHV GHQNFMENLT NPLDSSGMDM MDEGRIPKAR  60
KPYTITKQRE KWTEEEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE  120
SSGDNCNNLG AATSIQIPPP RPKRKPVHPY PRKLGSTAGK SIPALKQLEK PQLQVQPLYD  180
HDNGSPTSVL TAPQIGCDTL ASESGGSPAS TIDIEERCPT PSIATAELAA ELPPAKFEED  240
KGNGNCKEFT CDRSGAQVLR LFGKRVMVND LHQISTPDAE NMQTVADMEV DASAETPTSG  300
TGKFSSHGAG EASTWNPWLT NTHQFLYYLP HGQFFFIHSA LPCFSYHNEG APFPQLSNSQ  360
VVAPNQQHQH QTSEDHKHMQ REGSWAESNT VSSSVPETTT HNSETTESYR HESRNDDVMV  420
PIPGSNCKRG FVPYKRCVAE SKKLLKSQVS QEEADGEMTR LCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G18770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012090.0AK101209.1 Oryza sativa Japonica Group cDNA clone:J033031A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636284.10.0uncharacterized protein LOC4336779
TrEMBLA0A0D9W8M40.0A0A0D9W8M4_9ORYZ; Uncharacterized protein
STRINGLPERR04G18770.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.17e-35MYB_related family protein