PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G18630.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 376aa    MW: 40097.3 Da    PI: 5.1543
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G18630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.66.8e-30110198185
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  LPERR04G18630.1 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 198
                      89***************************955556888************************************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-41102215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-29107209IPR015300DNA-binding pseudobarrel domain
CDDcd100172.51E-25108195No hitNo description
PROSITE profilePS5086313.888110215IPR003340B3 DNA binding domain
SMARTSM010193.8E-21110215IPR003340B3 DNA binding domain
PfamPF023626.2E-27110213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEFTTPTTSS RFSKGEEEEE EEMEQEQDEE EEEAEASPRE IPFMTAAAGT ASSSSPTSVS  60
PSAAASVAAS TSVSGSPPFR SSDGAGASGS GGGGGGGGEE VEVIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRTGKLWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKRLDAG DTVSFCRGAA EDTRDRLFID WKRRADGFDF RNINTAAVPA RQIVFFGSPG  240
IPSPHAPLPP QPQPPPPMHP LHITVQPSPV VTTGLPMVLD SVAPHVNNPA AAASKRVRLF  300
GVNLDNPHPD GGQSSGHDAL SLRMPGWQRP ATLRSLELSP HLAAGAAGAD QTSAASSPSS  360
SSSSKREAHS SLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-611052143113B3 domain-containing transcription factor NGA1
5os9_B5e-611052143113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G18630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066880.0AL606688.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence.
GenBankAL6629870.0AL662987.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634107.11e-134LOW QUALITY PROTEIN: B3 domain-containing protein Os04g0581400-like
SwissprotQ6EU301e-100Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0D9W8K30.0A0A0D9W8K3_9ORYZ; Uncharacterized protein
STRINGLPERR04G18630.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-60B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]