PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 406aa    MW: 40830.3 Da    PI: 9.0492
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-3973134263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  LPERR04G17990.1  73 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 134
                      7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3169131IPR003851Zinc finger, Dof-type
PfamPF027012.8E-3375131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05977131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDAAHWHQGL GLVKPMEEML MAANAGGGGG AGANTNPAAV SGAGVARVGG GAAPAMAAAG  60
GAGSTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV  120
PVGGGSRKNK RSSSSSSSAA VSVSTANSVV TSANSSMAST VVAANKNSKL AHDGGAHDLN  180
LAFPHHHGGM HAAGAEGFPA FPSLESSSVA MASNGGRGGG GAVGALSAME LLRSTGCYMP  240
LQMPMQMPGE YATPGFALGE FRSPPPPSSQ SLLGFSLDPH GPSSAASAFG SGSALQGVPE  300
STGRLLFPFE DLKPPVSSGA GGGGGASGGG GDSGGHQFDQ GKEQGGGAGG GGQHDTPGFW  360
NGMIGGGSGA LWEARQLKRR MKDSASSEMS CLTIVPKPES SSHEKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9689636e-88EU968963.1 Zea mays clone 325253 dof zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147698.11e-138dof zinc finger protein DOF4.6-like isoform X1
SwissprotQ9SXG81e-132DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA0A0D9W8B60.0A0A0D9W8B6_9ORYZ; Uncharacterized protein
STRINGLPERR04G17990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.16e-38Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]