PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 298aa    MW: 32114.6 Da    PI: 8.8029
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.51.7e-292174255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWt eL ++Fv+a+e LGG++kAtPk il+lm+vkgLt++hvkSHLQ+YR 
  LPERR04G17940.1 21 PRLRWTAELNSSFVQAIEFLGGQHKATPKLILQLMGVKGLTISHVKSHLQMYRC 74
                     8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-281775IPR009057Homeodomain-like
SuperFamilySSF466899.5E-151974IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-222174IPR006447Myb domain, plants
PfamPF002493.5E-72273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGGDGVGRNG GVRQYVRSKV PRLRWTAELN SSFVQAIEFL GGQHKATPKL ILQLMGVKGL  60
TISHVKSHLQ MYRCSRGVGS HGAGRRSEMQ PQLQRKHSCA ADEQVPKEFL CPSLKRTRMG  120
TEATYKGMQG SQGISEMRTT GTQYCIDDYM QAMAMERRIK EGGLRWQRDA AAADGGAAAS  180
NLQTVGCLVQ ESDSFKIIKP EVHRLDPAVK LQCSKLEISE FLSDSIGSAA RDQPQKCSLS  240
LSLGPDPKCV QAIASSPSEN SCIISSSSSR SFSECSGNSG CFVAPGVNLE LSMSICGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018490.0AK101849.1 Oryza sativa Japonica Group cDNA clone:J033069K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634437.11e-157putative Myb family transcription factor At1g14600
TrEMBLA0A0D9W8B00.0A0A0D9W8B0_9ORYZ; Uncharacterized protein
STRINGLPERR04G17940.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-28G2-like family protein