PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17400.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 476aa    MW: 52014.5 Da    PI: 4.5716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17400.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13275322355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++++P+        K++Ka+iL +++ Y+k+Lq
  LPERR04G17400.2 275 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELQ 322
                      5899***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.7E-20176IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.859272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.56E-16275326No hitNo description
SuperFamilySSF474593.93E-18275342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17276338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10276322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-16278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MTYAFRPGQG LPGKSFESNE FVWLSNAHSA DRKTFQRALI AKTIVCVPFM HGVLELGTTD  60
RVLEDPALVD RVAASFWETP FRVVCSPEAP SSSPPPNDET ADAADIVFED LDNDNAVRET  120
TTVPAEESNE IGRHREVAEL ESNGANDQQI TMDIGEIYSL CEELDVDVDV VRTLDDDSSW  180
AVDPWSFQLV PTLSSPPDAA GVATHADDIA ALDGSCRSSS CFVEWKKTPN SDEVAVPLTS  240
GGDSQRLLKK SVAGGAWMNN GGGGSAAMTQ GSSIKNHVMS ERRRREKLNE MFLILKSVVP  300
SIHKVDKASI LAETIAYLKE LQKRVEELES NNEPSRRPIE TRRRRCREVT RKKAYAGAKR  360
KASPELVSGG SDDDDDGGTD GERHCVSNVN VTIMENKEVL LEMQCQWKEL LMARVFDAIK  420
GVFLDVLSVQ ASTSDGLLGL KIQAKVSAAA QSLLAAEMQL ASICISITTI YICLEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285ERRRRE
2281286RRRREK
3341352RRRRCREVTRKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692378.10.0PREDICTED: anthocyanin regulatory Lc protein-like isoform X1
SwissprotP135261e-115ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0D9W8310.0A0A0D9W831_9ORYZ; Uncharacterized protein
STRINGLPERR04G17400.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-26bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]