PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 779aa    MW: 84380.1 Da    PI: 7.4749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM898.4e-28451772128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                      pp frF+Ptd++lv +yL ++++g +   ++ i e++ y ++P +L +++++  +e+ wyf s+r++ ++ g+r++r+t+  +g+Wka+  +k+
  LPERR04G17350.1  45 PPVFRFKPTDKDLVEYYLLPRLQGLPAVPNNRIIETNAYAFHPDKLINELYKdrGEDAWYFLSPRARISRGGTRPTRSTEdrRGRWKASTGNKK 138
                      899***********************7776889*************853333226669*******************887679****7666565 PP

              NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++  +g+++  k++Lv+++g+ ++ + t+W+mhey++
  LPERR04G17350.1 139 ADEAigDGTVKFYKNSLVYHEGSVKNEKPTKWLMHEYTI 177
                      555556888999*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3243205IPR003441NAC domain
PROSITE profilePS5100537.25944205IPR003441NAC domain
PfamPF023651.5E-1845177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MEIPTKSWAD CLFRSLDRES YRRLGSRRHG KGEEKGAGGG GDKIPPVFRF KPTDKDLVEY  60
YLLPRLQGLP AVPNNRIIET NAYAFHPDKL INELYKDRGE DAWYFLSPRA RISRGGTRPT  120
RSTEDRRGRW KASTGNKKAD EAIGDGTVKF YKNSLVYHEG SVKNEKPTKW LMHEYTIPEY  180
TIKVDKSSAG NNRTDKHVMC KIYISSRKRS GDEDEDEEAS PSDATNDVEL SSSSQPGPQS  240
STGTAASDGD LSTPQPVPAV GTSEETAAVQ QTGNKRPAEE HAATAATVAQ RPPQQPKLTV  300
EGATAPPALY IGGSGAGGMQ MPPRMVILQD NQTGHTMAHA GGHVTFNGPV GMQQRKVAHN  360
EVMRRQQMAA YPGQMQLRQQ ASPAAFNGQA PPMQGTVMAN NGRQASSVQW PPAAFNGQAP  420
PMMGTVMAGI DNGQALSAQL RAAAFNGQAL SMQGTVMADH WQSSSVQRPA ATFNSQAPSM  480
PGTVMAENGQ ASSVQWAPVA FNGQAPHMQG PVMGDNGQDS SVQRPAAACK CNIHAPVVQG  540
PQVASNAQMS LEQRQQAAVA AAYNYNPQQQ RAALAYNLQL AQLQGRPMAM TPNGQPMSVQ  600
PQPRRNNVQM MQVQGPEVAQ NGESSAAPGQ RLTLRRPHPA VPDFGNLVFG GTMMMPQPLP  660
PQTVQPPAQE YWLPETPEIE ETPEMEEKRV IQQLLDEYYR QKRIKEEAQA HGAQGHPIPL  720
QVPPQQQQPC SNAVQSNDDR EERPAEVAAT TTEVARDGSA SDEGDGPQRN APAAAPQNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-164420315166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9W8210.0A0A0D9W821_9ORYZ; Uncharacterized protein
STRINGLPERR04G17350.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-22NAC-like, activated by AP3/PI