PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G16890.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 554aa    MW: 58015.6 Da    PI: 4.7835
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G16890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-19106156155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  LPERR04G16890.1 106 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 156
                      57*****887.**********843...6***********************9987 PP
2AP259.48.6e-19375424255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  LPERR04G16890.1 375 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAALAIKG 424
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.73E-32106166No hitNo description
PfamPF008474.3E-13106156IPR001471AP2/ERF domain
SMARTSM003806.7E-39107170IPR001471AP2/ERF domain
PROSITE profilePS5103224.289107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-33107166IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22107166IPR016177DNA-binding domain
SMARTSM003808.6E-39375438IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21375433IPR016177DNA-binding domain
PROSITE profilePS5103223.367375432IPR001471AP2/ERF domain
PfamPF008471.7E-12375424IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-32375433IPR001471AP2/ERF domain
CDDcd000188.31E-31376434No hitNo description
PRINTSPR003671.2E-10376387IPR001471AP2/ERF domain
PRINTSPR003671.2E-10398414IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MEADASNHHT PTTSSSVSVS VSSSSLSTSS SVSSLLDNGA QLLSSKLKHP KKRKRAAAAA  60
AADSPAASPD AANAHGGEDS ISSCSTEENA ASGGGGKASR SGFKHPSYRG VRRRSWGKWV  120
SEIREPRKKS RIWLGTFPTA EMAARAHDVA ALAIKGRNAH LNFPDSAHDL PRPASTSPAD  180
IQAAAAKAAA VESRCDDSSS STSPPPSPAA EERPEEEAAA EGCPDTAHAD NADAGGGGGQ  240
DNALFDLPDL LLDLRDGLWW SPVWPAAAMP AEEYDGGDAV VLNEPLLWAD RPEASGGGPA  300
GRSEKGNENE RYAMEQEQVL SPESNSCTCT CSNDASSAIS LNASSSGSVD SVSAGAGGGG  360
GKKRQRGGRD LKHPTYRGVR MRSWGKWVSE IREPRKKSRI WLGTFDTAEM AARAHDVAAL  420
AIKGRAAHLN FPELAGELPR AASASPKDVQ AAAALAAATA APSPSPCHVD AEDDECEQVV  480
ERPDEQTTAP VCVVENGTIL QQDGDIGLEY TYFTMPDALL EFGLPPPPSY YCGSPWDDAA  540
DDLFFGEPLV LWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18102432372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753KHPKKRK
2360366GKKRQRG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G16890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-136CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653649.13e-84PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ72e-45ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D9W7W60.0A0A0D9W7W6_9ORYZ; Uncharacterized protein
STRINGLPERR04G16890.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]