PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR04G16610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 450aa MW: 48838.7 Da PI: 7.2358 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.2 | 1.7e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ LPERR04G16610.1 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.0E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.99E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 5.63E-15 | 6 | 40 | No hit | No description |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.6E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-12 | 7 | 40 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 450 aa Download sequence Send to blast |
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLVNYTPMHA RDDIDDEEPR 60 VNKLKPPTLK LKEQKQLKKK PNHITMENGP FSDQNFRKMG DADLSYRSGS GSALSYSESC 120 APYGTADASE MTASAQSHAW ESLVPSKKRS CVTRPKPSSV ETLAKDLNSI MHEEQLLYLS 180 GSSEEDLIYH SETPVDSFEI GYGSMLLRPN SKSVEEESEA SSVPADNKSY VTSESYSGSA 240 SFVYSESKAT SNQNAITEQP KTLLLQTSDN ATRANLHAKN QDTLENAYSP LVSLDIEGKY 300 SEETGEKASA LKRLTKSSLN PLKRPHGTHF QSSLGLRGTM RSPKRASKFG GAMGLNCQVP 360 IMPKPGNAKD SACSGRGLNL FMLPPDKLSM LVPPQYVNND SDQDLLLDVP LNARLAEAEL 420 LCQPFQLSSV AHSSTSGGGS AEGEGCLKQP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR04G16610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK070729 | 0.0 | AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652600.2 | 0.0 | PREDICTED: uncharacterized protein LOC102708611 | ||||
TrEMBL | A0A0D9W7S6 | 0.0 | A0A0D9W7S6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G16610.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17570.3 | 7e-58 | GATA transcription factor 26 |