PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G16420.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 774aa    MW: 83621.2 Da    PI: 7.0869
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G16420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.36.5e-3193177187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  LPERR04G16420.1  93 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSELEA 177
                      8*********************************************************************866665..******985 PP
2trihelix107.77.7e-34493578187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev aLi++r e++ r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a
  LPERR04G16420.1 493 RWPKTEVNALIQLRMELDMRYQETGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLDA 578
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001290152IPR001005SANT/Myb domain
PfamPF138376.6E-2292178No hitNo description
PROSITE profilePS500906.9892150IPR017877Myb-like domain
CDDcd122038.73E-3192157No hitNo description
PROSITE profilePS500907.538486550IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.6E-4490549IPR009057Homeodomain-like
SMARTSM007175.2E-5490552IPR001005SANT/Myb domain
PfamPF138379.7E-24492579No hitNo description
CDDcd122038.33E-30492557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MQQQQHGGGG SQYGAVPTDM GPFSPTSHAS AAPLPLSSRP PPPPAVASLP QQQQPRTSYD  60
ELAGLGGFPD VDDMLGDAGG SGGGGGSGSA GNRWPREETL ALIRIRSEMD ATFRDATLKG  120
PLWEEVSRKL AELGYKRNAK KCKEKFENVH KYYKRTKEGR AGRQDGKSYR FFSELEALHA  180
AAPPTPTPQP HQIQQQQQLP PVSSSGPAMH SYAPPPPMGA MPPPTGPIQP APISSAAPAV  240
APLELPPQPP INLQGLSFSS MSGSESDEES EDDEMTAETG GSLGKRKRGG SAGGGKRLAT  300
FFEGLIKQVV DRQEEMQRRF LETMEKREAE RTAREEAWRR QEVARLNREQ EQLAQERAAA  360
ASRDAAIISF LQRIGGQSVQ VQAPPPVAAT VIQMPTPVQL QTPPPAKQPA RQQHQPQPTP  420
TPTPPPPPPQ APIPAAPLQQ QPPQQKETTT TTTHHEAVSV TPRSAPPTSG SSLEVVPAAA  480
ETNTESGSAS SSRWPKTEVN ALIQLRMELD MRYQETGPKG PLWEDISAGM RRLGYNRSSK  540
RCKEKWENIN KYYKKVKESN KKRPEDSKTC PYFHQLDAIY RRKHLTGGVG VGASVANVAG  600
ATPATAAAIE QQNPNRHEIE GKHINDNDKR NNGGGGGAAQ VPTSNGDTAP TAATFDVDSG  660
MKKLIHPIFT GVFRAQFTFV RKLTGYAVAV KPEDIVRELS EHPPPREFTT DETDSDDMGD  720
DYTDDGEEGE DDGKMQYRIQ FQRPNPGGAN TAPPPATTAV PTSTPTSTFL AMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143KRNAKKCKE
2287295RGGSAGGGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G16420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX682610.0X68261.1 O.sativa gt-2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880668.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0D9W7P80.0A0A0D9W7P8_9ORYZ; Uncharacterized protein
STRINGLPERR04G16420.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-41Trihelix family protein